Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_05520

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_05510 and AO356_05515 are separated by 13 nucleotidesAO356_05515 and AO356_05520 are separated by 220 nucleotidesAO356_05520 and AO356_05525 overlap by 1 nucleotidesAO356_05525 and AO356_05530 are separated by 36 nucleotides AO356_05510: AO356_05510 - succinylglutamate desuccinylase, at 1,234,453 to 1,235,571 _05510 AO356_05515: AO356_05515 - ABC transporter for L-Lysine, ATPase component (from data), at 1,235,585 to 1,236,349 _05515 AO356_05520: AO356_05520 - DNA ligase-associated DEXH box helicase, at 1,236,570 to 1,239,056 _05520 AO356_05525: AO356_05525 - DEAD/DEAH box helicase, at 1,239,056 to 1,239,712 _05525 AO356_05530: AO356_05530 - hypothetical protein, at 1,239,749 to 1,239,955 _05530 Position (kb) 1236 1237 1238 1239 1240Strain fitness (log2 ratio) -2 -1 0 1at 1235.588 kb on + strandat 1235.588 kb on + strandat 1235.588 kb on + strandat 1235.614 kb on + strandat 1235.614 kb on + strandat 1235.614 kb on + strandat 1235.614 kb on + strandat 1235.615 kb on - strandat 1235.615 kb on - strandat 1235.622 kb on - strandat 1235.713 kb on + strand, within AO356_05515at 1235.713 kb on + strand, within AO356_05515at 1235.714 kb on - strand, within AO356_05515at 1235.728 kb on + strand, within AO356_05515at 1235.728 kb on + strand, within AO356_05515at 1235.728 kb on + strand, within AO356_05515at 1235.728 kb on + strand, within AO356_05515at 1235.729 kb on - strand, within AO356_05515at 1235.729 kb on - strand, within AO356_05515at 1235.978 kb on + strand, within AO356_05515at 1235.978 kb on + strand, within AO356_05515at 1236.291 kb on + strandat 1236.291 kb on + strandat 1236.292 kb on - strandat 1236.347 kb on + strandat 1236.348 kb on - strandat 1236.508 kb on + strandat 1236.508 kb on + strandat 1236.508 kb on + strandat 1236.509 kb on - strandat 1236.521 kb on - strandat 1236.647 kb on - strandat 1236.647 kb on - strandat 1236.647 kb on - strandat 1236.711 kb on + strandat 1236.711 kb on + strandat 1236.711 kb on + strandat 1236.711 kb on + strandat 1236.711 kb on + strandat 1236.711 kb on + strandat 1236.711 kb on + strandat 1236.712 kb on - strandat 1236.712 kb on - strandat 1236.712 kb on - strandat 1236.712 kb on - strandat 1236.712 kb on - strandat 1236.712 kb on - strandat 1237.096 kb on + strand, within AO356_05520at 1237.096 kb on + strand, within AO356_05520at 1237.096 kb on + strand, within AO356_05520at 1237.096 kb on + strand, within AO356_05520at 1237.096 kb on + strand, within AO356_05520at 1237.096 kb on + strand, within AO356_05520at 1237.097 kb on - strand, within AO356_05520at 1237.097 kb on - strand, within AO356_05520at 1237.097 kb on - strand, within AO356_05520at 1237.399 kb on - strand, within AO356_05520at 1237.399 kb on - strand, within AO356_05520at 1237.454 kb on + strand, within AO356_05520at 1237.454 kb on + strand, within AO356_05520at 1237.454 kb on + strand, within AO356_05520at 1237.454 kb on + strand, within AO356_05520at 1237.455 kb on - strand, within AO356_05520at 1237.455 kb on - strand, within AO356_05520at 1237.455 kb on - strand, within AO356_05520at 1237.455 kb on - strand, within AO356_05520at 1237.906 kb on + strand, within AO356_05520at 1238.196 kb on + strand, within AO356_05520at 1238.196 kb on + strand, within AO356_05520at 1238.196 kb on + strand, within AO356_05520at 1238.196 kb on + strand, within AO356_05520at 1238.196 kb on + strand, within AO356_05520at 1238.197 kb on - strand, within AO356_05520at 1238.197 kb on - strand, within AO356_05520at 1238.197 kb on - strand, within AO356_05520at 1238.197 kb on - strand, within AO356_05520at 1238.197 kb on - strand, within AO356_05520at 1238.197 kb on - strand, within AO356_05520at 1238.197 kb on - strand, within AO356_05520at 1238.197 kb on - strand, within AO356_05520at 1238.197 kb on - strand, within AO356_05520at 1238.550 kb on + strand, within AO356_05520at 1238.550 kb on + strand, within AO356_05520at 1238.551 kb on - strand, within AO356_05520at 1238.796 kb on + strand, within AO356_05520at 1238.796 kb on + strand, within AO356_05520at 1238.796 kb on + strand, within AO356_05520at 1238.796 kb on + strand, within AO356_05520at 1238.796 kb on + strand, within AO356_05520at 1238.796 kb on + strand, within AO356_05520at 1239.122 kb on + strand, within AO356_05525at 1239.122 kb on + strand, within AO356_05525at 1239.123 kb on - strand, within AO356_05525at 1239.123 kb on - strand, within AO356_05525at 1239.123 kb on - strand, within AO356_05525at 1239.123 kb on - strand, within AO356_05525at 1239.123 kb on - strand, within AO356_05525at 1239.249 kb on + strand, within AO356_05525at 1239.249 kb on + strand, within AO356_05525at 1239.249 kb on + strand, within AO356_05525at 1239.250 kb on - strand, within AO356_05525at 1239.459 kb on + strand, within AO356_05525at 1239.491 kb on - strand, within AO356_05525at 1239.539 kb on + strand, within AO356_05525at 1239.540 kb on - strand, within AO356_05525at 1239.696 kb on + strandat 1239.696 kb on + strandat 1239.697 kb on - strandat 1239.697 kb on - strandat 1239.697 kb on - strandat 1239.955 kb on + strandat 1239.956 kb on - strandat 1239.956 kb on - strandat 1239.956 kb on - strandat 1240.006 kb on + strandat 1240.007 kb on - strandat 1240.007 kb on - strandat 1240.007 kb on - strandat 1240.007 kb on - strandat 1240.007 kb on - strandat 1240.015 kb on + strandat 1240.015 kb on + strandat 1240.015 kb on + strandat 1240.015 kb on + strandat 1240.016 kb on - strandat 1240.016 kb on - strandat 1240.016 kb on - strandat 1240.016 kb on - strandat 1240.016 kb on - strandat 1240.016 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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1,235,588 + -0.0
1,235,588 + -0.3
1,235,588 + -1.5
1,235,614 + -1.2
1,235,614 + -0.2
1,235,614 + +1.5
1,235,614 + -1.3
1,235,615 - +0.4
1,235,615 - -1.0
1,235,622 - -0.1
1,235,713 + AO356_05515 0.17 +1.4
1,235,713 + AO356_05515 0.17 +0.5
1,235,714 - AO356_05515 0.17 +0.2
1,235,728 + AO356_05515 0.19 +1.0
1,235,728 + AO356_05515 0.19 +0.3
1,235,728 + AO356_05515 0.19 -0.1
1,235,728 + AO356_05515 0.19 -0.3
1,235,729 - AO356_05515 0.19 +0.0
1,235,729 - AO356_05515 0.19 +0.7
1,235,978 + AO356_05515 0.51 +0.5
1,235,978 + AO356_05515 0.51 +1.7
1,236,291 + +1.2
1,236,291 + +0.9
1,236,292 - +0.3
1,236,347 + +0.4
1,236,348 - +1.3
1,236,508 + -0.2
1,236,508 + +0.4
1,236,508 + -0.3
1,236,509 - +0.7
1,236,521 - +0.8
1,236,647 - +0.7
1,236,647 - +0.5
1,236,647 - +1.0
1,236,711 + -0.2
1,236,711 + -0.4
1,236,711 + -0.8
1,236,711 + -0.3
1,236,711 + +0.2
1,236,711 + -1.8
1,236,711 + +0.7
1,236,712 - +0.1
1,236,712 - +0.7
1,236,712 - +0.3
1,236,712 - -0.1
1,236,712 - +0.7
1,236,712 - +0.2
1,237,096 + AO356_05520 0.21 -2.0
1,237,096 + AO356_05520 0.21 -1.2
1,237,096 + AO356_05520 0.21 +0.1
1,237,096 + AO356_05520 0.21 -0.6
1,237,096 + AO356_05520 0.21 -1.2
1,237,096 + AO356_05520 0.21 +0.5
1,237,097 - AO356_05520 0.21 +0.4
1,237,097 - AO356_05520 0.21 +0.3
1,237,097 - AO356_05520 0.21 +0.0
1,237,399 - AO356_05520 0.33 -0.0
1,237,399 - AO356_05520 0.33 -0.3
1,237,454 + AO356_05520 0.36 +0.3
1,237,454 + AO356_05520 0.36 +0.1
1,237,454 + AO356_05520 0.36 +0.2
1,237,454 + AO356_05520 0.36 -0.2
1,237,455 - AO356_05520 0.36 +0.6
1,237,455 - AO356_05520 0.36 -1.1
1,237,455 - AO356_05520 0.36 +0.4
1,237,455 - AO356_05520 0.36 +0.0
1,237,906 + AO356_05520 0.54 +0.8
1,238,196 + AO356_05520 0.65 +0.7
1,238,196 + AO356_05520 0.65 -0.5
1,238,196 + AO356_05520 0.65 +1.2
1,238,196 + AO356_05520 0.65 +0.3
1,238,196 + AO356_05520 0.65 -0.3
1,238,197 - AO356_05520 0.65 -0.4
1,238,197 - AO356_05520 0.65 +0.2
1,238,197 - AO356_05520 0.65 +1.2
1,238,197 - AO356_05520 0.65 -0.2
1,238,197 - AO356_05520 0.65 -0.1
1,238,197 - AO356_05520 0.65 -0.1
1,238,197 - AO356_05520 0.65 -1.4
1,238,197 - AO356_05520 0.65 -0.3
1,238,197 - AO356_05520 0.65 -2.3
1,238,550 + AO356_05520 0.80 -0.8
1,238,550 + AO356_05520 0.80 +0.5
1,238,551 - AO356_05520 0.80 +0.2
1,238,796 + AO356_05520 0.90 -0.2
1,238,796 + AO356_05520 0.90 -0.3
1,238,796 + AO356_05520 0.90 +0.8
1,238,796 + AO356_05520 0.90 -0.1
1,238,796 + AO356_05520 0.90 -1.4
1,238,796 + AO356_05520 0.90 -0.8
1,239,122 + AO356_05525 0.10 +1.5
1,239,122 + AO356_05525 0.10 +0.4
1,239,123 - AO356_05525 0.10 -0.3
1,239,123 - AO356_05525 0.10 +1.3
1,239,123 - AO356_05525 0.10 -0.4
1,239,123 - AO356_05525 0.10 +0.6
1,239,123 - AO356_05525 0.10 -0.7
1,239,249 + AO356_05525 0.29 -0.9
1,239,249 + AO356_05525 0.29 +0.4
1,239,249 + AO356_05525 0.29 -0.6
1,239,250 - AO356_05525 0.30 +0.3
1,239,459 + AO356_05525 0.61 +1.3
1,239,491 - AO356_05525 0.66 +0.4
1,239,539 + AO356_05525 0.74 -0.6
1,239,540 - AO356_05525 0.74 -0.5
1,239,696 + -0.6
1,239,696 + +0.6
1,239,697 - +1.2
1,239,697 - -0.2
1,239,697 - -0.3
1,239,955 + -0.6
1,239,956 - +0.8
1,239,956 - +0.3
1,239,956 - -0.0
1,240,006 + +0.6
1,240,007 - +0.1
1,240,007 - -0.4
1,240,007 - +0.6
1,240,007 - +0.6
1,240,007 - -0.1
1,240,015 + +0.6
1,240,015 + -0.6
1,240,015 + +1.0
1,240,015 + -0.6
1,240,016 - -0.4
1,240,016 - -0.1
1,240,016 - +0.7
1,240,016 - +0.2
1,240,016 - +0.9
1,240,016 - -0.1

Or see this region's nucleotide sequence