Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03060

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03055 and AO356_03060 are separated by 0 nucleotidesAO356_03060 and AO356_03065 overlap by 4 nucleotides AO356_03055: AO356_03055 - hypothetical protein, at 682,060 to 685,008 _03055 AO356_03060: AO356_03060 - GAF domain-containing protein, at 685,009 to 685,491 _03060 AO356_03065: AO356_03065 - AAA family ATPase, at 685,488 to 686,378 _03065 Position (kb) 685 686Strain fitness (log2 ratio) -2 -1 0 1 2 3at 684.058 kb on + strand, within AO356_03055at 684.058 kb on + strand, within AO356_03055at 684.058 kb on + strand, within AO356_03055at 684.059 kb on - strand, within AO356_03055at 684.059 kb on - strand, within AO356_03055at 684.113 kb on + strand, within AO356_03055at 684.113 kb on + strand, within AO356_03055at 684.113 kb on + strand, within AO356_03055at 684.113 kb on + strand, within AO356_03055at 684.114 kb on - strand, within AO356_03055at 684.131 kb on + strand, within AO356_03055at 684.131 kb on + strand, within AO356_03055at 684.132 kb on - strand, within AO356_03055at 684.132 kb on - strand, within AO356_03055at 684.157 kb on + strand, within AO356_03055at 684.526 kb on + strand, within AO356_03055at 684.526 kb on + strand, within AO356_03055at 684.526 kb on + strand, within AO356_03055at 684.526 kb on + strand, within AO356_03055at 684.527 kb on - strand, within AO356_03055at 684.544 kb on + strand, within AO356_03055at 684.544 kb on + strand, within AO356_03055at 684.545 kb on - strand, within AO356_03055at 684.545 kb on - strand, within AO356_03055at 684.589 kb on + strand, within AO356_03055at 684.589 kb on + strand, within AO356_03055at 684.589 kb on + strand, within AO356_03055at 684.590 kb on - strand, within AO356_03055at 684.590 kb on - strand, within AO356_03055at 684.590 kb on - strand, within AO356_03055at 684.590 kb on - strand, within AO356_03055at 684.590 kb on - strand, within AO356_03055at 684.590 kb on - strand, within AO356_03055at 684.590 kb on - strand, within AO356_03055at 684.808 kb on + strandat 684.808 kb on + strandat 684.808 kb on + strandat 684.808 kb on + strandat 684.809 kb on - strandat 684.916 kb on + strandat 684.916 kb on + strandat 684.916 kb on + strandat 685.034 kb on - strandat 685.075 kb on - strand, within AO356_03060at 685.329 kb on - strand, within AO356_03060at 685.329 kb on - strand, within AO356_03060at 685.329 kb on - strand, within AO356_03060at 685.540 kb on + strandat 685.697 kb on - strand, within AO356_03065at 685.843 kb on + strand, within AO356_03065at 685.843 kb on + strand, within AO356_03065at 685.843 kb on + strand, within AO356_03065at 685.843 kb on + strand, within AO356_03065at 685.844 kb on - strand, within AO356_03065at 685.844 kb on - strand, within AO356_03065at 685.844 kb on - strand, within AO356_03065at 685.844 kb on - strand, within AO356_03065at 686.236 kb on + strand, within AO356_03065at 686.404 kb on + strandat 686.404 kb on + strandat 686.405 kb on - strandat 686.405 kb on - strandat 686.405 kb on - strandat 686.405 kb on - strandat 686.405 kb on - strandat 686.405 kb on - strandat 686.405 kb on - strandat 686.450 kb on + strandat 686.450 kb on + strandat 686.451 kb on - strandat 686.462 kb on + strandat 686.462 kb on + strandat 686.462 kb on + strandat 686.462 kb on + strandat 686.462 kb on + strandat 686.462 kb on + strandat 686.462 kb on + strandat 686.462 kb on + strandat 686.462 kb on + strandat 686.463 kb on - strandat 686.463 kb on - strandat 686.463 kb on - strandat 686.463 kb on - strandat 686.463 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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684,058 + AO356_03055 0.68 +0.7
684,058 + AO356_03055 0.68 -0.4
684,058 + AO356_03055 0.68 -0.0
684,059 - AO356_03055 0.68 +0.3
684,059 - AO356_03055 0.68 +0.2
684,113 + AO356_03055 0.70 +0.7
684,113 + AO356_03055 0.70 -0.3
684,113 + AO356_03055 0.70 +0.8
684,113 + AO356_03055 0.70 -1.0
684,114 - AO356_03055 0.70 +0.5
684,131 + AO356_03055 0.70 +0.2
684,131 + AO356_03055 0.70 +0.2
684,132 - AO356_03055 0.70 +0.2
684,132 - AO356_03055 0.70 +2.8
684,157 + AO356_03055 0.71 +0.8
684,526 + AO356_03055 0.84 +0.9
684,526 + AO356_03055 0.84 +0.4
684,526 + AO356_03055 0.84 +1.4
684,526 + AO356_03055 0.84 -0.1
684,527 - AO356_03055 0.84 +0.6
684,544 + AO356_03055 0.84 +0.5
684,544 + AO356_03055 0.84 +1.5
684,545 - AO356_03055 0.84 +0.2
684,545 - AO356_03055 0.84 -0.3
684,589 + AO356_03055 0.86 +0.7
684,589 + AO356_03055 0.86 +0.8
684,589 + AO356_03055 0.86 +1.3
684,590 - AO356_03055 0.86 -0.2
684,590 - AO356_03055 0.86 -0.7
684,590 - AO356_03055 0.86 +0.3
684,590 - AO356_03055 0.86 -0.3
684,590 - AO356_03055 0.86 -0.8
684,590 - AO356_03055 0.86 +0.4
684,590 - AO356_03055 0.86 -0.4
684,808 + -0.1
684,808 + +0.9
684,808 + +0.3
684,808 + +0.9
684,809 - +0.7
684,916 + -0.0
684,916 + -0.4
684,916 + +1.5
685,034 - -1.2
685,075 - AO356_03060 0.14 -0.3
685,329 - AO356_03060 0.66 -1.3
685,329 - AO356_03060 0.66 +0.5
685,329 - AO356_03060 0.66 +0.1
685,540 + +1.3
685,697 - AO356_03065 0.23 +0.9
685,843 + AO356_03065 0.40 +1.1
685,843 + AO356_03065 0.40 +0.6
685,843 + AO356_03065 0.40 +1.1
685,843 + AO356_03065 0.40 +1.0
685,844 - AO356_03065 0.40 +1.0
685,844 - AO356_03065 0.40 +0.9
685,844 - AO356_03065 0.40 -1.4
685,844 - AO356_03065 0.40 +0.9
686,236 + AO356_03065 0.84 +1.1
686,404 + +1.1
686,404 + +2.3
686,405 - -0.5
686,405 - -0.7
686,405 - -0.2
686,405 - -0.3
686,405 - -1.5
686,405 - -0.8
686,405 - -1.2
686,450 + +1.1
686,450 + +0.6
686,451 - -0.3
686,462 + +1.1
686,462 + +0.7
686,462 + +0.3
686,462 + +1.0
686,462 + +1.0
686,462 + +1.7
686,462 + +1.4
686,462 + +0.8
686,462 + +0.5
686,463 - +0.5
686,463 - -1.6
686,463 - -1.0
686,463 - -1.5
686,463 - -2.0

Or see this region's nucleotide sequence