Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_006463

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
2,849,803	-		ABIE53_006462	0.25	-1.4
2,849,838	+		ABIE53_006462	0.28	+0.9
2,849,838	+		ABIE53_006462	0.28	+0.8
2,849,897	+		ABIE53_006462	0.32	-0.4
2,849,897	+		ABIE53_006462	0.32	+0.7
2,849,897	+		ABIE53_006462	0.32	+0.1
2,849,897	+		ABIE53_006462	0.32	-0.9
2,849,897	+		ABIE53_006462	0.32	-0.0
2,849,897	+		ABIE53_006462	0.32	+0.6
2,849,897	+		ABIE53_006462	0.32	-0.9
2,849,897	+		ABIE53_006462	0.32	-1.5
2,849,897	+		ABIE53_006462	0.32	+0.2
2,849,898	-		ABIE53_006462	0.33	-0.7
2,849,898	-		ABIE53_006462	0.33	-2.3
2,849,898	-		ABIE53_006462	0.33	-1.6
2,849,898	-		ABIE53_006462	0.33	+1.5
2,849,898	-		ABIE53_006462	0.33	-0.1
2,849,898	-		ABIE53_006462	0.33	-0.7
2,849,898	-		ABIE53_006462	0.33	+1.2
2,849,898	-		ABIE53_006462	0.33	+0.3
2,849,898	-		ABIE53_006462	0.33	-0.8
2,849,898	-		ABIE53_006462	0.33	-0.9
2,849,898	-		ABIE53_006462	0.33	-0.2
2,849,898	-		ABIE53_006462	0.33	-2.3
2,849,898	-		ABIE53_006462	0.33	-0.4
2,849,898	-		ABIE53_006462	0.33	+0.2
2,849,933	+		ABIE53_006462	0.35	-0.1
2,850,115	-		ABIE53_006462	0.49	+1.6
2,850,115	-		ABIE53_006462	0.49	-0.4
2,850,228	+		ABIE53_006462	0.57	-0.8
2,850,228	+		ABIE53_006462	0.57	+0.0
2,850,228	+		ABIE53_006462	0.57	+1.2
2,850,228	+		ABIE53_006462	0.57	+0.0
2,850,228	+		ABIE53_006462	0.57	-0.9
2,850,229	-		ABIE53_006462	0.57	-1.6
2,850,229	-		ABIE53_006462	0.57	+0.0
2,850,229	-		ABIE53_006462	0.57	-1.1
2,850,229	-		ABIE53_006462	0.57	+0.2
2,850,229	-		ABIE53_006462	0.57	-0.8
2,850,312	+		ABIE53_006462	0.63	+0.2
2,850,313	-		ABIE53_006462	0.63	-0.0
2,850,313	-		ABIE53_006462	0.63	-2.1
2,850,313	-		ABIE53_006462	0.63	+0.2
2,850,313	-		ABIE53_006462	0.63	-1.6
2,850,336	+		ABIE53_006462	0.65	-0.8
2,850,336	+		ABIE53_006462	0.65	+2.5
2,850,420	+		ABIE53_006462	0.71	+0.3
2,850,420	+		ABIE53_006462	0.71	-0.8
2,850,420	+		ABIE53_006462	0.71	+1.2
2,850,420	+		ABIE53_006462	0.71	+0.1
2,850,421	-		ABIE53_006462	0.71	+0.2
2,850,421	-		ABIE53_006462	0.71	+3.1
2,850,507	+		ABIE53_006462	0.78	+1.2
2,850,507	+		ABIE53_006462	0.78	+0.6
2,850,507	+		ABIE53_006462	0.78	-1.1
2,850,507	+		ABIE53_006462	0.78	-0.1
2,850,507	+		ABIE53_006462	0.78	+0.5
2,850,507	+		ABIE53_006462	0.78	-1.8
2,850,507	+		ABIE53_006462	0.78	+0.2
2,850,507	+		ABIE53_006462	0.78	-1.0
2,850,507	+		ABIE53_006462	0.78	-1.9
2,850,507	+		ABIE53_006462	0.78	+1.2
2,850,507	+		ABIE53_006462	0.78	-0.8
2,850,507	+		ABIE53_006462	0.78	+1.6
2,850,508	-		ABIE53_006462	0.78	+0.2
2,850,508	-		ABIE53_006462	0.78	-0.4
2,850,508	-		ABIE53_006462	0.78	-2.6
2,850,508	-		ABIE53_006462	0.78	-1.6
2,850,508	-		ABIE53_006462	0.78	-3.0
2,850,508	-		ABIE53_006462	0.78	+0.0
2,850,508	-		ABIE53_006462	0.78	-0.8
2,850,508	-		ABIE53_006462	0.78	+0.1
2,850,636	+		ABIE53_006462	0.87	+1.0
2,850,636	+		ABIE53_006462	0.87	-0.3
2,850,636	+		ABIE53_006462	0.87	+0.1
2,850,684	+				-1.4
2,850,684	+				+0.6
2,850,684	+				-2.3
2,850,685	-				-1.6
2,850,685	-				-1.1
2,850,685	-				-3.2
2,850,685	-				-1.6
2,850,685	-				+0.4
2,850,685	-				-0.3
2,850,685	-				-1.0
2,850,714	+				-0.8
2,850,714	+				+0.6
2,850,714	+				-0.8
2,850,714	+				+0.8
2,850,714	+				+2.8
2,850,715	-				-0.1
2,850,715	-				-0.9
2,850,715	-				-1.1
2,850,750	+				+1.2
2,850,750	+				-0.0
2,850,750	+				+1.2
2,850,750	+				+1.2
2,850,750	+				+0.6
2,850,750	+				-0.2
2,850,750	+				+0.7
2,850,751	-				+1.8
2,850,751	-				-0.0
2,850,751	-				-0.8
2,850,751	-				-0.1
2,850,751	-				-0.8
2,850,751	-				-0.4
2,850,751	-				-2.1
2,850,751	-				-1.1
2,850,809	+				-2.0
2,850,809	+				+0.6
2,850,810	-				-1.8
2,850,810	-				+1.8
2,850,810	-				-2.9
2,850,875	+				-2.1
2,850,875	+				-0.8
2,850,875	+				+1.2
2,850,905	+		ABIE53_006463	0.13	+0.5
2,850,905	+		ABIE53_006463	0.13	-1.4
2,850,979	+		ABIE53_006463	0.23	+0.7
2,850,980	-		ABIE53_006463	0.23	-3.8
2,850,980	-		ABIE53_006463	0.23	-0.4
2,850,980	-		ABIE53_006463	0.23	-2.4
2,851,046	+		ABIE53_006463	0.31	+0.1
2,851,046	+		ABIE53_006463	0.31	-0.4
2,851,046	+		ABIE53_006463	0.31	-2.0
2,851,046	+		ABIE53_006463	0.31	-1.8
2,851,046	+		ABIE53_006463	0.31	-0.0
2,851,046	+		ABIE53_006463	0.31	-0.4
2,851,046	+		ABIE53_006463	0.31	+0.8
2,851,046	+		ABIE53_006463	0.31	+1.2
2,851,046	+		ABIE53_006463	0.31	+2.9
2,851,047	-		ABIE53_006463	0.31	-2.1
2,851,047	-		ABIE53_006463	0.31	-2.3
2,851,047	-		ABIE53_006463	0.31	-3.1
2,851,047	-		ABIE53_006463	0.31	-1.8
2,851,047	-		ABIE53_006463	0.31	+1.0
2,851,047	-		ABIE53_006463	0.31	-1.4
2,851,047	-		ABIE53_006463	0.31	+0.2
2,851,047	-		ABIE53_006463	0.31	+1.2
2,851,047	-		ABIE53_006463	0.31	-1.1
2,851,047	-		ABIE53_006463	0.31	-0.5
2,851,047	-		ABIE53_006463	0.31	+0.2
2,851,047	-		ABIE53_006463	0.31	+0.0
2,851,047	-		ABIE53_006463	0.31	-0.9
2,851,047	-		ABIE53_006463	0.31	+0.7
2,851,047	-		ABIE53_006463	0.31	-2.7
2,851,047	-		ABIE53_006463	0.31	+0.2
2,851,047	-		ABIE53_006463	0.31	-0.4
2,851,187	+		ABIE53_006463	0.49	+2.5
2,851,187	+		ABIE53_006463	0.49	-0.6
2,851,188	-		ABIE53_006463	0.49	+0.8
2,851,246	+		ABIE53_006463	0.57	+1.0
2,851,246	+		ABIE53_006463	0.57	+0.3
2,851,246	+		ABIE53_006463	0.57	+1.6
2,851,246	+		ABIE53_006463	0.57	+0.2
2,851,246	+		ABIE53_006463	0.57	-0.4
2,851,246	+		ABIE53_006463	0.57	+1.2
2,851,246	+		ABIE53_006463	0.57	+0.7
2,851,246	+		ABIE53_006463	0.57	-2.4
2,851,246	+		ABIE53_006463	0.57	-2.6
2,851,246	+		ABIE53_006463	0.57	+0.2
2,851,246	+		ABIE53_006463	0.57	-0.8
2,851,246	+		ABIE53_006463	0.57	+0.8
2,851,246	+		ABIE53_006463	0.57	+2.4
2,851,246	+		ABIE53_006463	0.57	-0.4
2,851,247	-		ABIE53_006463	0.57	-0.4
2,851,247	-		ABIE53_006463	0.57	+0.6
2,851,247	-		ABIE53_006463	0.57	-3.7
2,851,247	-		ABIE53_006463	0.57	-1.5
2,851,247	-		ABIE53_006463	0.57	+0.2
2,851,247	-		ABIE53_006463	0.57	-1.8
2,851,247	-		ABIE53_006463	0.57	+1.6
2,851,247	-		ABIE53_006463	0.57	-2.6
2,851,247	-		ABIE53_006463	0.57	-1.1
2,851,247	-		ABIE53_006463	0.57	+0.9
2,851,247	-		ABIE53_006463	0.57	-2.2
2,851,247	-		ABIE53_006463	0.57	-0.8
2,851,247	-		ABIE53_006463	0.57	-0.5
2,851,247	-		ABIE53_006463	0.57	+0.9
2,851,247	-		ABIE53_006463	0.57	-3.0
2,851,247	-		ABIE53_006463	0.57	-1.1
2,851,247	-		ABIE53_006463	0.57	+1.0
2,851,247	-		ABIE53_006463	0.57	-2.5
2,851,247	-		ABIE53_006463	0.57	-3.3
2,851,247	-		ABIE53_006463	0.57	-0.8
2,851,247	-		ABIE53_006463	0.57	+1.4
2,851,247	-		ABIE53_006463	0.57	+3.2
2,851,277	+		ABIE53_006463	0.61	+1.5
2,851,277	+		ABIE53_006463	0.61	+2.4
2,851,277	+		ABIE53_006463	0.61	-2.1
2,851,277	+		ABIE53_006463	0.61	-0.9
2,851,278	-		ABIE53_006463	0.61	+0.2
2,851,278	-		ABIE53_006463	0.61	+0.2
2,851,278	-		ABIE53_006463	0.61	+0.3
2,851,278	-		ABIE53_006463	0.61	-2.0
2,851,278	-		ABIE53_006463	0.61	+0.4
2,851,278	-		ABIE53_006463	0.61	-1.2
2,851,307	+		ABIE53_006463	0.65	+1.2
2,851,307	+		ABIE53_006463	0.65	+0.2
2,851,307	+		ABIE53_006463	0.65	-1.6
2,851,307	+		ABIE53_006463	0.65	-0.1
2,851,308	-		ABIE53_006463	0.65	+0.2
2,851,308	-		ABIE53_006463	0.65	-1.8
2,851,342	+		ABIE53_006463	0.69	+1.8
2,851,342	+		ABIE53_006463	0.69	+0.2
2,851,342	+		ABIE53_006463	0.69	+1.6
2,851,342	+		ABIE53_006463	0.69	+0.4
2,851,342	+		ABIE53_006463	0.69	-1.4
2,851,342	+		ABIE53_006463	0.69	+2.6
2,851,342	+		ABIE53_006463	0.69	-0.4
2,851,342	+		ABIE53_006463	0.69	-1.8
2,851,342	+		ABIE53_006463	0.69	-0.1
2,851,342	+		ABIE53_006463	0.69	+0.0
2,851,342	+		ABIE53_006463	0.69	-2.5
2,851,343	-		ABIE53_006463	0.69	+0.4
2,851,343	-		ABIE53_006463	0.69	+0.2
2,851,343	-		ABIE53_006463	0.69	-0.7
2,851,469	+		ABIE53_006463	0.85	+1.2
2,851,469	+		ABIE53_006463	0.85	+0.8
2,851,469	+		ABIE53_006463	0.85	+0.9
2,851,469	+		ABIE53_006463	0.85	+0.8
2,851,469	+		ABIE53_006463	0.85	+0.2
2,851,470	-		ABIE53_006463	0.86	-1.1
2,851,470	-		ABIE53_006463	0.86	-2.0
2,851,483	+		ABIE53_006463	0.87	-2.3
2,851,483	+		ABIE53_006463	0.87	-0.4
2,851,483	+		ABIE53_006463	0.87	+0.2
2,851,483	+		ABIE53_006463	0.87	+0.5
2,851,483	+		ABIE53_006463	0.87	+2.8
2,851,483	+		ABIE53_006463	0.87	+0.0
2,851,483	+		ABIE53_006463	0.87	+1.4
2,851,483	+		ABIE53_006463	0.87	+1.2
2,851,483	+		ABIE53_006463	0.87	-2.2
2,851,483	+		ABIE53_006463	0.87	-0.4
2,851,483	+		ABIE53_006463	0.87	-1.8
2,851,483	+		ABIE53_006463	0.87	+0.4
2,851,484	-		ABIE53_006463	0.87	-0.3
2,851,484	-		ABIE53_006463	0.87	-0.8
2,851,484	-		ABIE53_006463	0.87	-0.4
2,851,484	-		ABIE53_006463	0.87	-0.9
2,851,484	-		ABIE53_006463	0.87	+0.2
2,851,484	-		ABIE53_006463	0.87	-1.6
2,851,487	+		ABIE53_006463	0.88	-1.6
2,851,487	+		ABIE53_006463	0.88	-3.3
2,851,487	+		ABIE53_006463	0.88	-1.6
2,851,487	+		ABIE53_006463	0.88	-1.7
2,851,487	+		ABIE53_006463	0.88	+1.2
2,851,487	+		ABIE53_006463	0.88	-1.0
2,851,487	+		ABIE53_006463	0.88	+1.4
2,851,487	+		ABIE53_006463	0.88	-0.8
2,851,487	+		ABIE53_006463	0.88	+0.5
2,851,487	+		ABIE53_006463	0.88	+1.0
2,851,487	+		ABIE53_006463	0.88	-2.4
2,851,488	-		ABIE53_006463	0.88	-0.8
2,851,488	-		ABIE53_006463	0.88	-2.3
2,851,488	-		ABIE53_006463	0.88	-0.7
2,851,488	-		ABIE53_006463	0.88	-0.8
2,851,488	-		ABIE53_006463	0.88	-1.3
2,851,488	-		ABIE53_006463	0.88	+1.2
2,851,488	-		ABIE53_006463	0.88	+0.9
2,851,488	-		ABIE53_006463	0.88	-1.1
2,851,488	-		ABIE53_006463	0.88	+0.6
2,851,488	-		ABIE53_006463	0.88	-1.9
2,851,488	-		ABIE53_006463	0.88	-2.1
2,851,488	-		ABIE53_006463	0.88	+1.2
2,851,488	-		ABIE53_006463	0.88	-0.4
2,851,524	-				-1.2
2,851,701	+				+0.8
2,851,701	+				-1.0
2,851,701	+				+1.2
2,851,702	-				+1.6
2,851,706	+				-1.3
2,851,706	+				+0.2
2,851,706	+				-1.7
2,851,706	+				+1.2
2,851,786	-				-1.1
2,851,787	+				-0.4
2,851,787	+				+0.2
2,851,787	+				-0.0
2,851,787	+				+2.2
2,851,787	+				-1.8
2,851,787	+				-1.8
2,851,787	+				+0.6
2,851,787	+				-1.8
2,851,788	-				+0.2
2,851,788	-				+0.1
2,851,788	-				-1.1
2,851,900	+		ABIE53_006464	0.13	+0.4
2,851,900	+		ABIE53_006464	0.13	+1.2
2,851,901	-		ABIE53_006464	0.13	+0.2
2,851,901	-		ABIE53_006464	0.13	-0.4
2,851,901	-		ABIE53_006464	0.13	-1.4
2,851,922	+		ABIE53_006464	0.15	+0.7
2,851,922	+		ABIE53_006464	0.15	-0.3
2,851,986	+		ABIE53_006464	0.19	-0.8
2,851,986	+		ABIE53_006464	0.19	-1.8
2,851,986	+		ABIE53_006464	0.19	-2.8
2,851,986	+		ABIE53_006464	0.19	-3.1
2,851,986	+		ABIE53_006464	0.19	-1.4
2,851,986	+		ABIE53_006464	0.19	+1.2
2,851,986	+		ABIE53_006464	0.19	-1.0
2,851,986	+		ABIE53_006464	0.19	+0.4
2,851,986	+		ABIE53_006464	0.19	+0.2
2,851,986	+		ABIE53_006464	0.19	+0.2
2,851,986	+		ABIE53_006464	0.19	-2.1
2,851,986	+		ABIE53_006464	0.19	-1.4
2,851,986	+		ABIE53_006464	0.19	-0.1
2,851,986	+		ABIE53_006464	0.19	-1.5
2,851,986	+		ABIE53_006464	0.19	-0.4
2,851,986	+		ABIE53_006464	0.19	-1.8
2,851,986	+		ABIE53_006464	0.19	-1.8
2,851,986	+		ABIE53_006464	0.19	-1.1
2,851,987	-		ABIE53_006464	0.19	+0.7
2,851,987	-		ABIE53_006464	0.19	+0.9
2,851,987	-		ABIE53_006464	0.19	+0.2
2,851,987	-		ABIE53_006464	0.19	-0.9
2,851,987	-		ABIE53_006464	0.19	-0.8
2,851,987	-		ABIE53_006464	0.19	-1.6
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