Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004691

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_004690 and ABIE53_004691 are separated by 173 nucleotidesABIE53_004691 and ABIE53_004692 are separated by 3 nucleotidesABIE53_004692 and ABIE53_004693 are separated by 40 nucleotides ABIE53_004690: ABIE53_004690 - alanine-glyoxylate transaminase/serine-glyoxylate transaminase/serine-pyruvate transaminase, at 872,279 to 873,499 _004690 ABIE53_004691: ABIE53_004691 - ACS family glucarate transporter-like MFS transporter, at 873,673 to 874,959 _004691 ABIE53_004692: ABIE53_004692 - 2-keto-4-pentenoate hydratase, at 874,963 to 875,748 _004692 ABIE53_004693: ABIE53_004693 - FAD/FMN-containing dehydrogenase/Fe-S oxidoreductase, at 875,789 to 878,809 _004693 Position (kb) 873 874 875Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 872.846 kb on + strand, within ABIE53_004690at 873.036 kb on - strand, within ABIE53_004690at 873.036 kb on - strand, within ABIE53_004690at 873.046 kb on + strand, within ABIE53_004690at 873.046 kb on + strand, within ABIE53_004690at 873.046 kb on + strand, within ABIE53_004690at 873.046 kb on + strand, within ABIE53_004690at 873.047 kb on - strand, within ABIE53_004690at 873.047 kb on - strand, within ABIE53_004690at 873.059 kb on + strand, within ABIE53_004690at 873.060 kb on - strand, within ABIE53_004690at 873.200 kb on + strand, within ABIE53_004690at 873.200 kb on + strand, within ABIE53_004690at 873.200 kb on + strand, within ABIE53_004690at 873.200 kb on + strand, within ABIE53_004690at 873.200 kb on + strand, within ABIE53_004690at 873.200 kb on + strand, within ABIE53_004690at 873.200 kb on + strand, within ABIE53_004690at 873.200 kb on + strand, within ABIE53_004690at 873.201 kb on - strand, within ABIE53_004690at 873.201 kb on - strand, within ABIE53_004690at 873.202 kb on + strand, within ABIE53_004690at 873.202 kb on + strand, within ABIE53_004690at 873.239 kb on - strand, within ABIE53_004690at 873.269 kb on + strand, within ABIE53_004690at 873.269 kb on + strand, within ABIE53_004690at 873.269 kb on + strand, within ABIE53_004690at 873.270 kb on - strand, within ABIE53_004690at 873.270 kb on - strand, within ABIE53_004690at 873.270 kb on - strand, within ABIE53_004690at 873.270 kb on - strand, within ABIE53_004690at 873.270 kb on - strand, within ABIE53_004690at 873.497 kb on + strandat 873.498 kb on - strandat 873.515 kb on + strandat 873.516 kb on - strandat 873.516 kb on - strandat 873.566 kb on - strandat 873.651 kb on + strandat 873.651 kb on + strandat 873.651 kb on + strandat 873.652 kb on - strandat 873.652 kb on - strandat 873.652 kb on - strandat 873.652 kb on - strandat 873.706 kb on - strandat 873.706 kb on - strandat 873.713 kb on + strandat 873.713 kb on + strandat 873.713 kb on + strandat 873.713 kb on + strandat 873.713 kb on + strandat 873.713 kb on + strandat 873.714 kb on - strandat 873.714 kb on - strandat 873.733 kb on + strandat 873.733 kb on + strandat 873.733 kb on + strandat 873.733 kb on + strandat 873.733 kb on + strandat 873.733 kb on + strandat 873.734 kb on - strandat 873.734 kb on - strandat 873.734 kb on - strandat 873.734 kb on - strandat 873.734 kb on - strandat 873.734 kb on - strandat 873.734 kb on - strandat 873.734 kb on - strandat 873.734 kb on - strandat 873.746 kb on - strandat 873.746 kb on - strandat 873.768 kb on + strandat 873.850 kb on + strand, within ABIE53_004691at 873.851 kb on - strand, within ABIE53_004691at 873.851 kb on - strand, within ABIE53_004691at 874.141 kb on + strand, within ABIE53_004691at 874.143 kb on - strand, within ABIE53_004691at 874.180 kb on + strand, within ABIE53_004691at 874.180 kb on + strand, within ABIE53_004691at 874.181 kb on - strand, within ABIE53_004691at 874.181 kb on - strand, within ABIE53_004691at 874.181 kb on - strand, within ABIE53_004691at 874.181 kb on - strand, within ABIE53_004691at 874.363 kb on + strand, within ABIE53_004691at 874.363 kb on + strand, within ABIE53_004691at 874.364 kb on - strand, within ABIE53_004691at 874.364 kb on - strand, within ABIE53_004691at 874.364 kb on - strand, within ABIE53_004691at 874.364 kb on - strand, within ABIE53_004691at 874.373 kb on - strand, within ABIE53_004691at 874.414 kb on + strand, within ABIE53_004691at 874.415 kb on - strand, within ABIE53_004691at 874.415 kb on - strand, within ABIE53_004691at 874.429 kb on + strand, within ABIE53_004691at 874.429 kb on + strand, within ABIE53_004691at 874.429 kb on + strand, within ABIE53_004691at 874.430 kb on - strand, within ABIE53_004691at 874.430 kb on - strand, within ABIE53_004691at 874.430 kb on - strand, within ABIE53_004691at 874.430 kb on - strand, within ABIE53_004691at 874.430 kb on - strand, within ABIE53_004691at 874.430 kb on - strand, within ABIE53_004691at 874.430 kb on - strand, within ABIE53_004691at 874.528 kb on + strand, within ABIE53_004691at 874.528 kb on + strand, within ABIE53_004691at 874.528 kb on + strand, within ABIE53_004691at 874.528 kb on + strand, within ABIE53_004691at 874.529 kb on - strand, within ABIE53_004691at 874.529 kb on - strand, within ABIE53_004691at 874.531 kb on - strand, within ABIE53_004691at 874.561 kb on - strand, within ABIE53_004691at 874.633 kb on + strand, within ABIE53_004691at 874.633 kb on + strand, within ABIE53_004691at 874.634 kb on - strand, within ABIE53_004691at 874.634 kb on - strand, within ABIE53_004691at 874.634 kb on - strand, within ABIE53_004691at 874.634 kb on - strand, within ABIE53_004691at 874.634 kb on - strand, within ABIE53_004691at 874.634 kb on - strand, within ABIE53_004691at 874.634 kb on - strand, within ABIE53_004691at 874.813 kb on + strand, within ABIE53_004691at 875.323 kb on + strand, within ABIE53_004692at 875.324 kb on - strand, within ABIE53_004692at 875.324 kb on - strand, within ABIE53_004692at 875.324 kb on - strand, within ABIE53_004692at 875.325 kb on + strand, within ABIE53_004692at 875.325 kb on + strand, within ABIE53_004692at 875.325 kb on + strand, within ABIE53_004692at 875.325 kb on + strand, within ABIE53_004692at 875.325 kb on + strand, within ABIE53_004692at 875.325 kb on + strand, within ABIE53_004692at 875.325 kb on + strand, within ABIE53_004692at 875.326 kb on - strand, within ABIE53_004692at 875.326 kb on - strand, within ABIE53_004692at 875.326 kb on - strand, within ABIE53_004692at 875.326 kb on - strand, within ABIE53_004692at 875.479 kb on + strand, within ABIE53_004692at 875.480 kb on - strand, within ABIE53_004692at 875.480 kb on - strand, within ABIE53_004692at 875.662 kb on + strand, within ABIE53_004692at 875.662 kb on + strand, within ABIE53_004692at 875.662 kb on + strand, within ABIE53_004692at 875.662 kb on + strand, within ABIE53_004692at 875.662 kb on + strand, within ABIE53_004692at 875.662 kb on + strand, within ABIE53_004692at 875.663 kb on - strand, within ABIE53_004692at 875.663 kb on - strand, within ABIE53_004692at 875.663 kb on - strand, within ABIE53_004692at 875.743 kb on + strandat 875.743 kb on + strandat 875.743 kb on + strandat 875.743 kb on + strandat 875.743 kb on + strandat 875.744 kb on - strandat 875.776 kb on - strandat 875.931 kb on - strandat 875.951 kb on + strandat 875.951 kb on + strandat 875.952 kb on - strandat 875.952 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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872,846 + ABIE53_004690 0.46 -2.9
873,036 - ABIE53_004690 0.62 -3.9
873,036 - ABIE53_004690 0.62 -0.1
873,046 + ABIE53_004690 0.63 +0.8
873,046 + ABIE53_004690 0.63 +1.9
873,046 + ABIE53_004690 0.63 -1.9
873,046 + ABIE53_004690 0.63 -0.7
873,047 - ABIE53_004690 0.63 -0.1
873,047 - ABIE53_004690 0.63 +1.3
873,059 + ABIE53_004690 0.64 -1.5
873,060 - ABIE53_004690 0.64 +1.7
873,200 + ABIE53_004690 0.75 -2.6
873,200 + ABIE53_004690 0.75 +2.2
873,200 + ABIE53_004690 0.75 +2.0
873,200 + ABIE53_004690 0.75 +0.5
873,200 + ABIE53_004690 0.75 +0.2
873,200 + ABIE53_004690 0.75 -1.3
873,200 + ABIE53_004690 0.75 +1.5
873,200 + ABIE53_004690 0.75 -1.3
873,201 - ABIE53_004690 0.76 +1.1
873,201 - ABIE53_004690 0.76 -0.4
873,202 + ABIE53_004690 0.76 -1.7
873,202 + ABIE53_004690 0.76 -1.7
873,239 - ABIE53_004690 0.79 -2.0
873,269 + ABIE53_004690 0.81 +1.3
873,269 + ABIE53_004690 0.81 +3.2
873,269 + ABIE53_004690 0.81 -1.3
873,270 - ABIE53_004690 0.81 +1.3
873,270 - ABIE53_004690 0.81 -2.0
873,270 - ABIE53_004690 0.81 +1.0
873,270 - ABIE53_004690 0.81 -0.8
873,270 - ABIE53_004690 0.81 -0.0
873,497 + +1.3
873,498 - +1.1
873,515 + -0.3
873,516 - -0.2
873,516 - -2.6
873,566 - -1.0
873,651 + +0.1
873,651 + +5.2
873,651 + +1.2
873,652 - +3.3
873,652 - +1.0
873,652 - -2.3
873,652 - +0.9
873,706 - -0.1
873,706 - -0.3
873,713 + +3.0
873,713 + +1.3
873,713 + -0.1
873,713 + -1.0
873,713 + -2.0
873,713 + -0.3
873,714 - -2.7
873,714 - -1.9
873,733 + +0.2
873,733 + -2.9
873,733 + -2.0
873,733 + -0.7
873,733 + -0.5
873,733 + -0.3
873,734 - -0.7
873,734 - -0.0
873,734 - +1.3
873,734 - -2.1
873,734 - +0.3
873,734 - +1.7
873,734 - +1.4
873,734 - +2.1
873,734 - -1.5
873,746 - -1.7
873,746 - -1.3
873,768 + +0.3
873,850 + ABIE53_004691 0.14 -0.2
873,851 - ABIE53_004691 0.14 +0.7
873,851 - ABIE53_004691 0.14 -1.3
874,141 + ABIE53_004691 0.36 +2.4
874,143 - ABIE53_004691 0.37 +1.3
874,180 + ABIE53_004691 0.39 +0.3
874,180 + ABIE53_004691 0.39 +2.3
874,181 - ABIE53_004691 0.39 -1.5
874,181 - ABIE53_004691 0.39 -2.7
874,181 - ABIE53_004691 0.39 +1.0
874,181 - ABIE53_004691 0.39 -0.7
874,363 + ABIE53_004691 0.54 -0.3
874,363 + ABIE53_004691 0.54 +0.5
874,364 - ABIE53_004691 0.54 +1.0
874,364 - ABIE53_004691 0.54 -1.9
874,364 - ABIE53_004691 0.54 -0.4
874,364 - ABIE53_004691 0.54 -2.1
874,373 - ABIE53_004691 0.54 -0.7
874,414 + ABIE53_004691 0.58 +3.3
874,415 - ABIE53_004691 0.58 +0.1
874,415 - ABIE53_004691 0.58 -0.6
874,429 + ABIE53_004691 0.59 +1.3
874,429 + ABIE53_004691 0.59 -3.4
874,429 + ABIE53_004691 0.59 +1.3
874,430 - ABIE53_004691 0.59 -1.9
874,430 - ABIE53_004691 0.59 -1.0
874,430 - ABIE53_004691 0.59 +0.3
874,430 - ABIE53_004691 0.59 +1.4
874,430 - ABIE53_004691 0.59 +2.5
874,430 - ABIE53_004691 0.59 -0.1
874,430 - ABIE53_004691 0.59 +1.5
874,528 + ABIE53_004691 0.66 +4.0
874,528 + ABIE53_004691 0.66 +2.0
874,528 + ABIE53_004691 0.66 -0.3
874,528 + ABIE53_004691 0.66 -2.0
874,529 - ABIE53_004691 0.67 -1.0
874,529 - ABIE53_004691 0.67 +2.5
874,531 - ABIE53_004691 0.67 +0.3
874,561 - ABIE53_004691 0.69 -0.7
874,633 + ABIE53_004691 0.75 +1.2
874,633 + ABIE53_004691 0.75 +0.6
874,634 - ABIE53_004691 0.75 +1.0
874,634 - ABIE53_004691 0.75 +3.9
874,634 - ABIE53_004691 0.75 +2.5
874,634 - ABIE53_004691 0.75 -0.1
874,634 - ABIE53_004691 0.75 -0.3
874,634 - ABIE53_004691 0.75 +0.5
874,634 - ABIE53_004691 0.75 +0.3
874,813 + ABIE53_004691 0.89 -2.1
875,323 + ABIE53_004692 0.46 -3.3
875,324 - ABIE53_004692 0.46 -1.7
875,324 - ABIE53_004692 0.46 -1.9
875,324 - ABIE53_004692 0.46 +0.7
875,325 + ABIE53_004692 0.46 -0.7
875,325 + ABIE53_004692 0.46 +0.7
875,325 + ABIE53_004692 0.46 -0.9
875,325 + ABIE53_004692 0.46 -1.5
875,325 + ABIE53_004692 0.46 -0.1
875,325 + ABIE53_004692 0.46 -0.0
875,325 + ABIE53_004692 0.46 -1.3
875,326 - ABIE53_004692 0.46 -3.1
875,326 - ABIE53_004692 0.46 -0.7
875,326 - ABIE53_004692 0.46 +0.2
875,326 - ABIE53_004692 0.46 -0.6
875,479 + ABIE53_004692 0.66 +1.3
875,480 - ABIE53_004692 0.66 -2.6
875,480 - ABIE53_004692 0.66 -2.1
875,662 + ABIE53_004692 0.89 +0.6
875,662 + ABIE53_004692 0.89 +0.9
875,662 + ABIE53_004692 0.89 +2.3
875,662 + ABIE53_004692 0.89 +1.3
875,662 + ABIE53_004692 0.89 -0.7
875,662 + ABIE53_004692 0.89 -1.0
875,663 - ABIE53_004692 0.89 +1.3
875,663 - ABIE53_004692 0.89 +1.3
875,663 - ABIE53_004692 0.89 +0.0
875,743 + +0.7
875,743 + +0.1
875,743 + -0.1
875,743 + -1.1
875,743 + -0.3
875,744 - -4.2
875,776 - +1.3
875,931 - -0.9
875,951 + +1.3
875,951 + +0.9
875,952 - +0.3
875,952 - -1.0

Or see this region's nucleotide sequence