Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004092 and ABIE53_004093 are separated by 109 nucleotides ABIE53_004093 and ABIE53_004094 are separated by 65 nucleotides ABIE53_004094 and ABIE53_004095 are separated by 455 nucleotides
ABIE53_004092: ABIE53_004092 - L-fucose mutarotase, at 256,483 to 256,878
_004092
ABIE53_004093: ABIE53_004093 - hypothetical protein, at 256,988 to 257,263
_004093
ABIE53_004094: ABIE53_004094 - hypothetical protein, at 257,329 to 257,697
_004094
ABIE53_004095: ABIE53_004095 - transcriptional regulator with XRE-family HTH domain, at 258,153 to 259,073
_004095
Position (kb) 257
258 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 256.414 kb on + strand at 256.415 kb on - strand at 256.415 kb on - strand at 256.415 kb on - strand at 256.415 kb on - strand at 256.505 kb on - strand at 256.620 kb on + strand, within ABIE53_004092 at 256.620 kb on + strand, within ABIE53_004092 at 256.620 kb on + strand, within ABIE53_004092 at 256.620 kb on + strand, within ABIE53_004092 at 256.621 kb on - strand, within ABIE53_004092 at 256.621 kb on - strand, within ABIE53_004092 at 256.621 kb on - strand, within ABIE53_004092 at 256.671 kb on + strand, within ABIE53_004092 at 256.672 kb on - strand, within ABIE53_004092 at 256.672 kb on - strand, within ABIE53_004092 at 256.828 kb on + strand, within ABIE53_004092 at 256.828 kb on + strand, within ABIE53_004092 at 256.829 kb on - strand, within ABIE53_004092 at 256.873 kb on + strand at 256.873 kb on + strand at 256.873 kb on + strand at 256.874 kb on - strand at 256.874 kb on - strand at 256.907 kb on - strand at 256.942 kb on + strand at 256.942 kb on + strand at 256.943 kb on - strand at 256.957 kb on + strand at 256.957 kb on + strand at 256.957 kb on + strand at 256.957 kb on + strand at 256.957 kb on + strand at 256.957 kb on + strand at 256.957 kb on + strand at 256.958 kb on - strand at 256.958 kb on - strand at 256.958 kb on - strand at 256.958 kb on - strand at 256.958 kb on - strand at 256.958 kb on - strand at 257.306 kb on + strand at 257.306 kb on + strand at 257.306 kb on + strand at 257.306 kb on + strand at 257.307 kb on - strand at 257.307 kb on - strand at 257.619 kb on + strand, within ABIE53_004094 at 257.619 kb on + strand, within ABIE53_004094 at 257.619 kb on + strand, within ABIE53_004094 at 257.666 kb on + strand at 257.667 kb on - strand at 257.685 kb on + strand at 257.685 kb on + strand at 257.685 kb on + strand at 257.685 kb on + strand at 257.685 kb on + strand at 257.685 kb on + strand at 257.685 kb on + strand at 257.686 kb on - strand at 257.686 kb on - strand at 257.686 kb on - strand at 257.686 kb on - strand at 257.686 kb on - strand at 257.686 kb on - strand at 257.686 kb on - strand at 257.686 kb on - strand at 257.686 kb on - strand at 257.686 kb on - strand at 257.686 kb on - strand at 257.686 kb on - strand at 257.686 kb on - strand at 257.708 kb on + strand at 257.708 kb on + strand at 257.708 kb on + strand at 257.709 kb on - strand at 257.709 kb on - strand at 257.718 kb on + strand at 257.719 kb on - strand at 257.726 kb on + strand at 257.797 kb on + strand at 257.797 kb on + strand at 257.797 kb on + strand at 257.797 kb on + strand at 257.798 kb on - strand at 257.798 kb on - strand at 257.808 kb on + strand at 257.808 kb on + strand at 257.809 kb on - strand at 257.861 kb on - strand at 257.861 kb on - strand at 257.861 kb on - strand at 257.967 kb on + strand at 257.967 kb on + strand at 257.967 kb on + strand at 257.967 kb on + strand at 257.968 kb on - strand at 257.968 kb on - strand at 258.090 kb on - strand at 258.140 kb on + strand at 258.140 kb on + strand at 258.140 kb on + strand at 258.141 kb on - strand at 258.151 kb on + strand at 258.152 kb on - strand at 258.544 kb on - strand, within ABIE53_004095
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 256,414 + +1.5 256,415 - +1.8 256,415 - +0.2 256,415 - +1.6 256,415 - +0.5 256,505 - -1.1 256,620 + ABIE53_004092 0.35 -0.7 256,620 + ABIE53_004092 0.35 -1.6 256,620 + ABIE53_004092 0.35 -0.4 256,620 + ABIE53_004092 0.35 +1.7 256,621 - ABIE53_004092 0.35 -0.8 256,621 - ABIE53_004092 0.35 +0.0 256,621 - ABIE53_004092 0.35 +1.2 256,671 + ABIE53_004092 0.47 +3.2 256,672 - ABIE53_004092 0.48 -0.1 256,672 - ABIE53_004092 0.48 -1.5 256,828 + ABIE53_004092 0.87 -3.0 256,828 + ABIE53_004092 0.87 +1.0 256,829 - ABIE53_004092 0.87 -1.8 256,873 + -1.1 256,873 + -0.8 256,873 + +0.7 256,874 - -3.5 256,874 - -2.1 256,907 - -1.1 256,942 + -1.1 256,942 + -0.6 256,943 - +1.0 256,957 + -3.1 256,957 + -0.8 256,957 + +1.5 256,957 + +3.8 256,957 + -1.9 256,957 + +0.4 256,957 + -0.2 256,958 - -0.0 256,958 - -1.4 256,958 - -0.2 256,958 - -1.9 256,958 - +0.1 256,958 - +0.9 257,306 + +0.4 257,306 + -0.4 257,306 + +0.4 257,306 + +0.4 257,307 - -0.4 257,307 - -2.2 257,619 + ABIE53_004094 0.79 +3.3 257,619 + ABIE53_004094 0.79 +0.2 257,619 + ABIE53_004094 0.79 -1.1 257,666 + +2.0 257,667 - -0.2 257,685 + -0.4 257,685 + -0.8 257,685 + +4.6 257,685 + +0.6 257,685 + +1.1 257,685 + -0.5 257,685 + -2.4 257,686 - +0.7 257,686 - -0.0 257,686 - +1.1 257,686 - -1.6 257,686 - -0.4 257,686 - +0.5 257,686 - +1.5 257,686 - +0.4 257,686 - +1.8 257,686 - +0.4 257,686 - +2.5 257,686 - -0.4 257,686 - +0.2 257,708 + -0.4 257,708 + -2.7 257,708 + +0.5 257,709 - +5.2 257,709 - -0.2 257,718 + -0.3 257,719 - +1.4 257,726 + +0.9 257,797 + +1.3 257,797 + +0.0 257,797 + -0.5 257,797 + +0.0 257,798 - -0.8 257,798 - +0.2 257,808 + -0.4 257,808 + +1.1 257,809 - -1.2 257,861 - +0.3 257,861 - -1.4 257,861 - -4.1 257,967 + -0.4 257,967 + +0.7 257,967 + +0.2 257,967 + -1.4 257,968 - +3.2 257,968 - +0.3 258,090 - +1.5 258,140 + -0.2 258,140 + +1.0 258,140 + +0.8 258,141 - +0.2 258,151 + +1.2 258,152 - +2.2 258,544 - ABIE53_004095 0.42 -0.6
Or see this region's nucleotide sequence