Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001992

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
2,238,050	+				-1.8
2,238,050	+				-0.0
2,238,050	+				+1.0
2,238,050	+				-0.6
2,238,130	-				+1.2
2,238,324	+		ABIE53_001991	0.30	+3.7
2,238,325	-		ABIE53_001991	0.30	-2.5
2,238,325	-		ABIE53_001991	0.30	+0.7
2,238,417	+		ABIE53_001991	0.40	+0.6
2,238,418	-		ABIE53_001991	0.40	+2.5
2,238,418	-		ABIE53_001991	0.40	-2.5
2,238,476	+		ABIE53_001991	0.46	+1.2
2,238,696	+		ABIE53_001991	0.71	-2.2
2,238,696	+		ABIE53_001991	0.71	+0.5
2,238,696	+		ABIE53_001991	0.71	+0.7
2,238,697	-		ABIE53_001991	0.71	-2.2
2,238,697	-		ABIE53_001991	0.71	-1.0
2,238,780	+		ABIE53_001991	0.80	+1.1
2,238,780	+		ABIE53_001991	0.80	+0.5
2,238,781	-		ABIE53_001991	0.80	+0.5
2,238,786	+		ABIE53_001991	0.81	-1.1
2,238,786	+		ABIE53_001991	0.81	-1.3
2,238,787	-		ABIE53_001991	0.81	-1.2
2,238,867	+		ABIE53_001991	0.90	-0.8
2,238,868	-		ABIE53_001991	0.90	+2.2
2,238,868	-		ABIE53_001991	0.90	+0.8
2,238,868	-		ABIE53_001991	0.90	-2.0
2,238,868	-		ABIE53_001991	0.90	+1.5
2,238,868	-		ABIE53_001991	0.90	+1.7
2,239,160	+		ABIE53_001992	0.19	-1.6
2,239,160	+		ABIE53_001992	0.19	-0.2
2,239,161	-		ABIE53_001992	0.19	+0.2
2,239,190	+		ABIE53_001992	0.22	-1.4
2,239,190	+		ABIE53_001992	0.22	-2.5
2,239,190	+		ABIE53_001992	0.22	-1.4
2,239,190	+		ABIE53_001992	0.22	+0.2
2,239,190	+		ABIE53_001992	0.22	+1.2
2,239,191	-		ABIE53_001992	0.22	-1.8
2,239,394	+		ABIE53_001992	0.41	-2.1
2,239,394	+		ABIE53_001992	0.41	+0.6
2,239,394	+		ABIE53_001992	0.41	-1.9
2,239,394	+		ABIE53_001992	0.41	-1.1
2,239,394	+		ABIE53_001992	0.41	-0.8
2,239,394	+		ABIE53_001992	0.41	+0.2
2,239,394	+		ABIE53_001992	0.41	-1.0
2,239,395	-		ABIE53_001992	0.41	-2.4
2,239,395	-		ABIE53_001992	0.41	+0.2
2,239,395	-		ABIE53_001992	0.41	+0.2
2,239,395	-		ABIE53_001992	0.41	-2.1
2,239,395	-		ABIE53_001992	0.41	+0.2
2,239,395	-		ABIE53_001992	0.41	+1.2
2,239,452	+		ABIE53_001992	0.46	-0.5
2,239,452	+		ABIE53_001992	0.46	-2.4
2,239,452	+		ABIE53_001992	0.46	+0.8
2,239,452	+		ABIE53_001992	0.46	-2.8
2,239,452	+		ABIE53_001992	0.46	-0.8
2,239,452	+		ABIE53_001992	0.46	-2.4
2,239,453	-		ABIE53_001992	0.46	-0.9
2,239,453	-		ABIE53_001992	0.46	-0.4
2,239,453	-		ABIE53_001992	0.46	+0.2
2,239,453	-		ABIE53_001992	0.46	-0.8
2,239,453	-		ABIE53_001992	0.46	+3.2
2,239,453	-		ABIE53_001992	0.46	+0.6
2,239,453	-		ABIE53_001992	0.46	+1.1
2,239,453	-		ABIE53_001992	0.46	+1.6
2,239,459	+		ABIE53_001992	0.47	+1.0
2,239,459	+		ABIE53_001992	0.47	+0.0
2,239,459	+		ABIE53_001992	0.47	-1.4
2,239,460	-		ABIE53_001992	0.47	-0.8
2,239,646	+		ABIE53_001992	0.64	+0.2
2,239,647	-		ABIE53_001992	0.64	-1.4
2,239,647	-		ABIE53_001992	0.64	-1.4
2,239,761	-		ABIE53_001992	0.75	+1.2
2,239,761	-		ABIE53_001992	0.75	-0.0
2,239,769	+		ABIE53_001992	0.75	-0.2
2,239,770	-		ABIE53_001992	0.75	-0.4
2,239,770	-		ABIE53_001992	0.75	+0.5
2,239,770	-		ABIE53_001992	0.75	-0.8
2,239,770	-		ABIE53_001992	0.75	-0.5
2,239,858	+		ABIE53_001992	0.84	+0.2
2,239,858	+		ABIE53_001992	0.84	+1.2
2,239,858	+		ABIE53_001992	0.84	+1.8
2,239,858	+		ABIE53_001992	0.84	+1.8
2,239,858	+		ABIE53_001992	0.84	+1.8
2,239,859	-		ABIE53_001992	0.84	+1.8
2,239,859	-		ABIE53_001992	0.84	-0.1
2,239,859	-		ABIE53_001992	0.84	-1.3
2,239,859	-		ABIE53_001992	0.84	-0.4
2,239,859	-		ABIE53_001992	0.84	-1.1
2,239,859	-		ABIE53_001992	0.84	+0.1
2,239,859	-		ABIE53_001992	0.84	-2.0
2,239,859	-		ABIE53_001992	0.84	-2.8
2,239,859	-		ABIE53_001992	0.84	+0.1
2,240,033	+				+0.4
2,240,033	+				-0.8
2,240,033	+				+1.7
2,240,033	+				+0.5
2,240,033	+				+1.6
2,240,034	-				-0.2
2,240,034	-				+1.6
2,240,034	-				+1.2
2,240,048	+				-1.1
2,240,048	+				+0.1
2,240,048	+				+0.2
2,240,048	+				-1.1
2,240,048	+				+1.7
2,240,048	+				+1.8
2,240,048	+				+0.9
2,240,049	-				+3.5
2,240,049	-				-0.8
2,240,049	-				-2.6
2,240,049	-				-0.4
2,240,049	-				+0.1
2,240,049	-				-0.7
2,240,052	+				+0.5
2,240,052	+				-0.2
2,240,052	+				-0.4
2,240,216	+		ABIE53_001993	0.17	+2.4
2,240,217	-		ABIE53_001993	0.17	-2.1
2,240,217	-		ABIE53_001993	0.17	+0.2
2,240,281	+		ABIE53_001993	0.23	-2.2
2,240,281	+		ABIE53_001993	0.23	+1.2
2,240,281	+		ABIE53_001993	0.23	-4.4
2,240,282	-		ABIE53_001993	0.23	+3.5
2,240,431	+		ABIE53_001993	0.37	+0.1
2,240,563	-		ABIE53_001993	0.50	-1.8
2,240,563	-		ABIE53_001993	0.50	-0.8
2,240,563	-		ABIE53_001993	0.50	-0.8
2,240,595	+		ABIE53_001993	0.53	+4.0
2,240,595	+		ABIE53_001993	0.53	-1.1
2,240,595	+		ABIE53_001993	0.53	+0.2
2,240,595	+		ABIE53_001993	0.53	-0.4
2,240,595	+		ABIE53_001993	0.53	+1.8
2,240,595	+		ABIE53_001993	0.53	+2.8
2,240,595	+		ABIE53_001993	0.53	-0.4
2,240,596	-		ABIE53_001993	0.53	-0.4
2,240,596	-		ABIE53_001993	0.53	-0.8
2,240,596	-		ABIE53_001993	0.53	+1.0
2,240,596	-		ABIE53_001993	0.53	-0.8
2,240,596	-		ABIE53_001993	0.53	+4.0
2,240,596	-		ABIE53_001993	0.53	-0.4
2,240,707	+		ABIE53_001993	0.63	-1.8
2,240,707	+		ABIE53_001993	0.63	+0.5
2,240,707	+		ABIE53_001993	0.63	-1.0
2,240,708	-		ABIE53_001993	0.64	+1.2
2,240,708	-		ABIE53_001993	0.64	-0.4
2,240,734	+		ABIE53_001993	0.66	-1.9
2,240,734	+		ABIE53_001993	0.66	-0.6
2,240,734	+		ABIE53_001993	0.66	+1.6
2,240,735	-		ABIE53_001993	0.66	-0.6
2,240,854	+		ABIE53_001993	0.77	-2.4
2,240,854	+		ABIE53_001993	0.77	-0.8
2,240,855	-		ABIE53_001993	0.77	+0.3
2,240,855	-		ABIE53_001993	0.77	-1.1
2,240,881	+		ABIE53_001993	0.80	-0.4
2,240,881	+		ABIE53_001993	0.80	+0.2
2,240,882	-		ABIE53_001993	0.80	+2.2
2,240,910	+		ABIE53_001993	0.83	-0.8
2,240,910	+		ABIE53_001993	0.83	+2.2
2,240,910	+		ABIE53_001993	0.83	-1.3
2,240,911	-		ABIE53_001993	0.83	-0.8
2,240,911	-		ABIE53_001993	0.83	+2.2