Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000828 and ABIE53_000829 are separated by 18 nucleotides ABIE53_000829 and ABIE53_000830 are separated by 116 nucleotides ABIE53_000830 and ABIE53_000831 are separated by 181 nucleotides
ABIE53_000828: ABIE53_000828 - preprotein translocase subunit SecF, at 897,027 to 897,977
_000828
ABIE53_000829: ABIE53_000829 - preprotein translocase subunit SecD, at 897,996 to 900,071
_000829
ABIE53_000830: ABIE53_000830 - preprotein translocase subunit YajC, at 900,188 to 900,520
_000830
ABIE53_000831: ABIE53_000831 - queuine tRNA-ribosyltransferase, at 900,702 to 901,895
_000831
Position (kb) 897
898
899
900
901 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 897.014 kb on + strand at 897.014 kb on + strand at 897.014 kb on + strand at 897.015 kb on - strand at 897.015 kb on - strand at 897.018 kb on + strand at 897.018 kb on + strand at 897.018 kb on + strand at 897.018 kb on + strand at 897.019 kb on - strand at 900.141 kb on - strand at 900.141 kb on - strand at 900.190 kb on - strand at 900.190 kb on - strand at 900.190 kb on - strand at 900.190 kb on - strand at 900.190 kb on - strand at 900.283 kb on - strand, within ABIE53_000830 at 900.283 kb on - strand, within ABIE53_000830 at 900.283 kb on - strand, within ABIE53_000830 at 900.536 kb on - strand at 900.538 kb on - strand at 900.538 kb on - strand at 900.538 kb on - strand at 900.538 kb on - strand at 900.538 kb on - strand at 900.574 kb on - strand at 900.574 kb on - strand at 900.627 kb on + strand at 900.628 kb on - strand at 900.628 kb on - strand at 900.628 kb on - strand at 900.662 kb on + strand at 900.663 kb on - strand at 900.663 kb on - strand at 900.708 kb on + strand at 900.708 kb on + strand at 900.708 kb on + strand at 900.709 kb on - strand at 900.709 kb on - strand at 900.709 kb on - strand at 900.709 kb on - strand at 900.828 kb on + strand, within ABIE53_000831 at 900.828 kb on + strand, within ABIE53_000831 at 900.828 kb on + strand, within ABIE53_000831 at 900.829 kb on - strand, within ABIE53_000831 at 900.829 kb on - strand, within ABIE53_000831 at 900.829 kb on - strand, within ABIE53_000831 at 900.831 kb on + strand, within ABIE53_000831 at 900.831 kb on + strand, within ABIE53_000831 at 900.831 kb on + strand, within ABIE53_000831 at 900.832 kb on - strand, within ABIE53_000831 at 900.832 kb on - strand, within ABIE53_000831 at 900.832 kb on - strand, within ABIE53_000831 at 900.832 kb on - strand, within ABIE53_000831 at 900.851 kb on - strand, within ABIE53_000831 at 900.900 kb on + strand, within ABIE53_000831 at 900.901 kb on - strand, within ABIE53_000831 at 900.925 kb on + strand, within ABIE53_000831 at 900.925 kb on + strand, within ABIE53_000831 at 900.925 kb on + strand, within ABIE53_000831 at 900.925 kb on + strand, within ABIE53_000831 at 900.925 kb on + strand, within ABIE53_000831 at 900.925 kb on + strand, within ABIE53_000831 at 900.925 kb on + strand, within ABIE53_000831 at 900.925 kb on + strand, within ABIE53_000831 at 900.925 kb on + strand, within ABIE53_000831 at 900.925 kb on + strand, within ABIE53_000831 at 900.925 kb on + strand, within ABIE53_000831 at 900.925 kb on + strand, within ABIE53_000831 at 900.925 kb on + strand, within ABIE53_000831 at 900.925 kb on + strand, within ABIE53_000831 at 900.925 kb on + strand, within ABIE53_000831 at 900.926 kb on - strand, within ABIE53_000831 at 900.926 kb on - strand, within ABIE53_000831 at 900.926 kb on - strand, within ABIE53_000831 at 900.926 kb on - strand, within ABIE53_000831 at 900.926 kb on - strand, within ABIE53_000831 at 900.926 kb on - strand, within ABIE53_000831 at 900.926 kb on - strand, within ABIE53_000831 at 900.926 kb on - strand, within ABIE53_000831 at 900.926 kb on - strand, within ABIE53_000831 at 900.926 kb on - strand, within ABIE53_000831 at 900.926 kb on - strand, within ABIE53_000831 at 900.926 kb on - strand, within ABIE53_000831 at 900.928 kb on - strand, within ABIE53_000831 at 900.928 kb on - strand, within ABIE53_000831 at 900.928 kb on - strand, within ABIE53_000831 at 900.928 kb on - strand, within ABIE53_000831 at 900.928 kb on - strand, within ABIE53_000831 at 901.007 kb on + strand, within ABIE53_000831
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 897,014 + +0.3 897,014 + +1.3 897,014 + -1.0 897,015 - +0.3 897,015 - -1.5 897,018 + +0.1 897,018 + -1.7 897,018 + +0.6 897,018 + -0.7 897,019 - -0.3 900,141 - +0.4 900,141 - -2.2 900,190 - -1.7 900,190 - -1.5 900,190 - -0.3 900,190 - +1.3 900,190 - -0.3 900,283 - ABIE53_000830 0.29 -3.6 900,283 - ABIE53_000830 0.29 -3.7 900,283 - ABIE53_000830 0.29 -2.5 900,536 - +0.9 900,538 - -1.0 900,538 - +1.7 900,538 - -1.7 900,538 - -0.3 900,538 - +0.7 900,574 - +0.3 900,574 - -0.3 900,627 + -1.5 900,628 - +0.8 900,628 - -0.5 900,628 - -1.0 900,662 + -2.3 900,663 - -2.6 900,663 - -0.3 900,708 + -2.1 900,708 + +2.3 900,708 + +0.3 900,709 - -2.3 900,709 - -2.2 900,709 - -3.0 900,709 - +1.7 900,828 + ABIE53_000831 0.11 +0.3 900,828 + ABIE53_000831 0.11 -1.7 900,828 + ABIE53_000831 0.11 -2.0 900,829 - ABIE53_000831 0.11 -1.3 900,829 - ABIE53_000831 0.11 -1.9 900,829 - ABIE53_000831 0.11 -0.0 900,831 + ABIE53_000831 0.11 -1.7 900,831 + ABIE53_000831 0.11 -1.5 900,831 + ABIE53_000831 0.11 -3.2 900,832 - ABIE53_000831 0.11 +0.3 900,832 - ABIE53_000831 0.11 -0.5 900,832 - ABIE53_000831 0.11 -1.0 900,832 - ABIE53_000831 0.11 -1.3 900,851 - ABIE53_000831 0.12 -2.2 900,900 + ABIE53_000831 0.17 -1.0 900,901 - ABIE53_000831 0.17 -3.6 900,925 + ABIE53_000831 0.19 -1.5 900,925 + ABIE53_000831 0.19 -2.6 900,925 + ABIE53_000831 0.19 -1.5 900,925 + ABIE53_000831 0.19 -0.7 900,925 + ABIE53_000831 0.19 -3.4 900,925 + ABIE53_000831 0.19 -0.0 900,925 + ABIE53_000831 0.19 -0.7 900,925 + ABIE53_000831 0.19 -0.0 900,925 + ABIE53_000831 0.19 -0.8 900,925 + ABIE53_000831 0.19 -1.0 900,925 + ABIE53_000831 0.19 -2.4 900,925 + ABIE53_000831 0.19 -2.0 900,925 + ABIE53_000831 0.19 -2.4 900,925 + ABIE53_000831 0.19 -1.9 900,925 + ABIE53_000831 0.19 +0.3 900,926 - ABIE53_000831 0.19 -2.4 900,926 - ABIE53_000831 0.19 +3.9 900,926 - ABIE53_000831 0.19 -1.9 900,926 - ABIE53_000831 0.19 -1.5 900,926 - ABIE53_000831 0.19 -2.8 900,926 - ABIE53_000831 0.19 -1.5 900,926 - ABIE53_000831 0.19 -2.6 900,926 - ABIE53_000831 0.19 -4.0 900,926 - ABIE53_000831 0.19 -2.0 900,926 - ABIE53_000831 0.19 -1.3 900,926 - ABIE53_000831 0.19 -1.7 900,926 - ABIE53_000831 0.19 +0.5 900,928 - ABIE53_000831 0.19 -2.0 900,928 - ABIE53_000831 0.19 -1.5 900,928 - ABIE53_000831 0.19 -1.9 900,928 - ABIE53_000831 0.19 -0.0 900,928 - ABIE53_000831 0.19 -3.0 901,007 + ABIE53_000831 0.26 -1.9
Or see this region's nucleotide sequence