Experiment: Motility M4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3358 and Shew_3359 are separated by 211 nucleotides Shew_3359 and Shew_3360 are separated by 140 nucleotides Shew_3360 and Shew_3361 are separated by 49 nucleotides Shew_3361 and Shew_3362 are separated by 112 nucleotides
Shew_3358: Shew_3358 - outer membrane efflux family protein, putative (RefSeq), at 4,007,656 to 4,008,936
_3358
Shew_3359: Shew_3359 - hypothetical protein (RefSeq), at 4,009,148 to 4,009,579
_3359
Shew_3360: Shew_3360 - hypothetical protein (RefSeq), at 4,009,720 to 4,009,902
_3360
Shew_3361: Shew_3361 - hypothetical protein (RefSeq), at 4,009,952 to 4,010,335
_3361
Shew_3362: Shew_3362 - hypothetical protein (RefSeq), at 4,010,448 to 4,010,858
_3362
Position (kb) 4009
4010 Strain fitness (log2 ratio) -2
-1
0
1 at 4008.740 kb on - strand, within Shew_3358 at 4008.956 kb on + strand at 4009.048 kb on + strand at 4009.422 kb on + strand, within Shew_3359 at 4009.775 kb on + strand, within Shew_3360 at 4009.775 kb on + strand, within Shew_3360 at 4009.783 kb on - strand, within Shew_3360 at 4009.783 kb on - strand, within Shew_3360 at 4009.864 kb on - strand, within Shew_3360 at 4009.866 kb on + strand, within Shew_3360 at 4009.984 kb on - strand at 4010.012 kb on - strand, within Shew_3361 at 4010.055 kb on - strand, within Shew_3361 at 4010.403 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M4 remove 4,008,740 - Shew_3358 0.85 -0.7 4,008,956 + -0.4 4,009,048 + +0.8 4,009,422 + Shew_3359 0.63 +0.1 4,009,775 + Shew_3360 0.30 -1.1 4,009,775 + Shew_3360 0.30 -0.6 4,009,783 - Shew_3360 0.34 +0.1 4,009,783 - Shew_3360 0.34 -0.6 4,009,864 - Shew_3360 0.79 -0.2 4,009,866 + Shew_3360 0.80 -1.8 4,009,984 - +0.3 4,010,012 - Shew_3361 0.16 -0.5 4,010,055 - Shew_3361 0.27 -0.1 4,010,403 + -0.6
Or see this region's nucleotide sequence