Experiment: Motility M4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2889 and Shew_2890 are separated by 19 nucleotides Shew_2890 and Shew_2891 are separated by 186 nucleotides Shew_2891 and Shew_2892 are separated by 145 nucleotides
Shew_2889: Shew_2889 - uncharacterized lipoprotein (RefSeq), at 3,428,466 to 3,429,032
_2889
Shew_2890: Shew_2890 - peptidyl-prolyl cis-trans isomerase, cyclophilin type (RefSeq), at 3,429,052 to 3,429,636
_2890
Shew_2891: Shew_2891 - hypothetical protein (RefSeq), at 3,429,823 to 3,430,155
_2891
Shew_2892: Shew_2892 - major facilitator transporter (RefSeq), at 3,430,301 to 3,431,719
_2892
Position (kb)
3429
3430
3431 Strain fitness (log2 ratio)
-1
0
1 at 3428.899 kb on - strand, within Shew_2889 at 3429.474 kb on - strand, within Shew_2890 at 3429.475 kb on - strand, within Shew_2890 at 3429.935 kb on + strand, within Shew_2891 at 3429.935 kb on + strand, within Shew_2891 at 3429.935 kb on + strand, within Shew_2891 at 3429.943 kb on - strand, within Shew_2891 at 3429.943 kb on - strand, within Shew_2891 at 3429.943 kb on - strand, within Shew_2891 at 3429.943 kb on - strand, within Shew_2891 at 3429.943 kb on - strand, within Shew_2891 at 3430.942 kb on - strand, within Shew_2892 at 3431.011 kb on + strand, within Shew_2892
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M4 remove 3,428,899 - Shew_2889 0.76 -0.7 3,429,474 - Shew_2890 0.72 +0.8 3,429,475 - Shew_2890 0.72 -1.7 3,429,935 + Shew_2891 0.34 -0.3 3,429,935 + Shew_2891 0.34 -0.4 3,429,935 + Shew_2891 0.34 -0.9 3,429,943 - Shew_2891 0.36 +0.0 3,429,943 - Shew_2891 0.36 -1.6 3,429,943 - Shew_2891 0.36 -0.8 3,429,943 - Shew_2891 0.36 -0.6 3,429,943 - Shew_2891 0.36 +0.3 3,430,942 - Shew_2892 0.45 +0.2 3,431,011 + Shew_2892 0.50 +0.0
Or see this region's nucleotide sequence