Experiment: Motility M4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2791 and Shew_2792 are separated by 62 nucleotides Shew_2792 and Shew_2793 are separated by 241 nucleotides
Shew_2791: Shew_2791 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 3,301,398 to 3,305,078
_2791
Shew_2792: Shew_2792 - phospholipid/glycerol acyltransferase (RefSeq), at 3,305,141 to 3,306,958
_2792
Shew_2793: Shew_2793 - succinyl-diaminopimelate desuccinylase (RefSeq), at 3,307,200 to 3,308,333
_2793
Position (kb)
3305
3306
3307 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3304.263 kb on - strand, within Shew_2791 at 3304.436 kb on - strand, within Shew_2791 at 3304.555 kb on + strand, within Shew_2791 at 3304.581 kb on - strand, within Shew_2791 at 3304.732 kb on + strand at 3305.412 kb on + strand, within Shew_2792 at 3305.910 kb on - strand, within Shew_2792 at 3306.079 kb on + strand, within Shew_2792 at 3306.092 kb on + strand, within Shew_2792 at 3306.129 kb on - strand, within Shew_2792 at 3306.426 kb on + strand, within Shew_2792 at 3306.434 kb on - strand, within Shew_2792 at 3306.541 kb on - strand, within Shew_2792 at 3306.562 kb on + strand, within Shew_2792 at 3306.570 kb on - strand, within Shew_2792 at 3306.570 kb on - strand, within Shew_2792 at 3307.610 kb on - strand, within Shew_2793 at 3307.726 kb on + strand, within Shew_2793 at 3307.787 kb on + strand, within Shew_2793 at 3307.820 kb on - strand, within Shew_2793 at 3307.870 kb on + strand, within Shew_2793 at 3307.924 kb on - strand, within Shew_2793
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M4 remove 3,304,263 - Shew_2791 0.78 -0.1 3,304,436 - Shew_2791 0.83 -0.6 3,304,555 + Shew_2791 0.86 +0.6 3,304,581 - Shew_2791 0.86 +0.9 3,304,732 + -2.8 3,305,412 + Shew_2792 0.15 +0.6 3,305,910 - Shew_2792 0.42 -1.0 3,306,079 + Shew_2792 0.52 -0.2 3,306,092 + Shew_2792 0.52 +0.6 3,306,129 - Shew_2792 0.54 +3.2 3,306,426 + Shew_2792 0.71 +0.1 3,306,434 - Shew_2792 0.71 +0.4 3,306,541 - Shew_2792 0.77 -0.9 3,306,562 + Shew_2792 0.78 +0.0 3,306,570 - Shew_2792 0.79 +1.8 3,306,570 - Shew_2792 0.79 +0.4 3,307,610 - Shew_2793 0.36 +0.7 3,307,726 + Shew_2793 0.46 -0.1 3,307,787 + Shew_2793 0.52 +0.5 3,307,820 - Shew_2793 0.55 -0.8 3,307,870 + Shew_2793 0.59 +0.5 3,307,924 - Shew_2793 0.64 -0.6
Or see this region's nucleotide sequence