Experiment: Motility M4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2768 and Shew_2769 are separated by 395 nucleotides Shew_2769 and Shew_2770 are separated by 0 nucleotides Shew_2770 and Shew_2771 are separated by 22 nucleotides
Shew_2768: Shew_2768 - flagellar motor protein PomA (RefSeq), at 3,273,459 to 3,274,226
_2768
Shew_2769: Shew_2769 - exodeoxyribonuclease VII, small subunit (RefSeq), at 3,274,622 to 3,274,861
_2769
Shew_2770: Shew_2770 - polyprenyl synthetase (RefSeq), at 3,274,862 to 3,275,743
_2770
Shew_2771: Shew_2771 - 1-deoxy-D-xylulose-5-phosphate synthase (RefSeq), at 3,275,766 to 3,277,634
_2771
Position (kb) 3274
3275
3276 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 3273.982 kb on + strand, within Shew_2768 at 3274.078 kb on + strand, within Shew_2768 at 3274.121 kb on + strand, within Shew_2768 at 3274.205 kb on - strand at 3274.313 kb on - strand at 3274.313 kb on - strand at 3274.317 kb on + strand at 3274.320 kb on + strand at 3274.420 kb on - strand at 3274.475 kb on + strand at 3274.694 kb on + strand, within Shew_2769 at 3275.625 kb on + strand, within Shew_2770
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M4 remove 3,273,982 + Shew_2768 0.68 -5.6 3,274,078 + Shew_2768 0.81 -4.3 3,274,121 + Shew_2768 0.86 -3.0 3,274,205 - -5.4 3,274,313 - -3.6 3,274,313 - -1.3 3,274,317 + -4.3 3,274,320 + -1.0 3,274,420 - +0.4 3,274,475 + -3.2 3,274,694 + Shew_2769 0.30 -0.6 3,275,625 + Shew_2770 0.87 -4.0
Or see this region's nucleotide sequence