Strain Fitness in Shewanella loihica PV-4 around Shew_2758

Experiment: Motility M4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntxni and Shew_2757 are separated by 152 nucleotidesShew_2757 and Shew_2758 are separated by 23 nucleotidesShew_2758 and Shew_2759 are separated by 121 nucleotides Shew_2756: xni - exonuclease IX (RefSeq), at 3,260,520 to 3,261,290 xni Shew_2757: Shew_2757 - hypothetical protein (RefSeq), at 3,261,443 to 3,261,829 _2757 Shew_2758: Shew_2758 - hypothetical protein (RefSeq), at 3,261,853 to 3,262,335 _2758 Shew_2759: Shew_2759 - peptidase S9 prolyl oligopeptidase (RefSeq), at 3,262,457 to 3,265,270 _2759 Position (kb) 3261 3262 3263Strain fitness (log2 ratio) -3 -2 -1 0 1at 3260.870 kb on + strand, within xniat 3260.870 kb on + strand, within xniat 3260.878 kb on - strand, within xniat 3260.971 kb on + strand, within xniat 3261.129 kb on + strand, within xniat 3261.624 kb on - strand, within Shew_2757at 3261.675 kb on + strand, within Shew_2757at 3261.675 kb on + strand, within Shew_2757at 3261.836 kb on + strandat 3261.852 kb on + strandat 3261.860 kb on - strandat 3261.864 kb on + strandat 3262.491 kb on + strandat 3262.558 kb on + strandat 3262.953 kb on + strand, within Shew_2759at 3263.063 kb on - strand, within Shew_2759at 3263.205 kb on - strand, within Shew_2759at 3263.294 kb on - strand, within Shew_2759

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility M4
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3,260,870 + xni Shew_2756 0.45 -0.8
3,260,870 + xni Shew_2756 0.45 +0.6
3,260,878 - xni Shew_2756 0.46 -0.3
3,260,971 + xni Shew_2756 0.58 +0.8
3,261,129 + xni Shew_2756 0.79 +0.0
3,261,624 - Shew_2757 0.47 -0.8
3,261,675 + Shew_2757 0.60 -0.5
3,261,675 + Shew_2757 0.60 -0.2
3,261,836 + -0.6
3,261,852 + -2.8
3,261,860 - -0.4
3,261,864 + -0.3
3,262,491 + -0.0
3,262,558 + +0.2
3,262,953 + Shew_2759 0.18 -0.1
3,263,063 - Shew_2759 0.22 -0.3
3,263,205 - Shew_2759 0.27 +0.2
3,263,294 - Shew_2759 0.30 +0.1

Or see this region's nucleotide sequence