Experiment: Motility M4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2586 and Shew_2587 overlap by 1 nucleotides Shew_2587 and Shew_2588 are separated by 77 nucleotides Shew_2588 and Shew_2589 are separated by 41 nucleotides
Shew_2586: Shew_2586 - amidohydrolase (RefSeq), at 3,050,329 to 3,053,469
_2586
Shew_2587: Shew_2587 - hypothetical protein (RefSeq), at 3,053,469 to 3,054,737
_2587
Shew_2588: Shew_2588 - putative lipoprotein (RefSeq), at 3,054,815 to 3,055,231
_2588
Shew_2589: Shew_2589 - hypothetical protein (RefSeq), at 3,055,273 to 3,056,010
_2589
Position (kb)
3053
3054
3055 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3052.549 kb on + strand, within Shew_2586 at 3052.596 kb on - strand, within Shew_2586 at 3052.627 kb on + strand, within Shew_2586 at 3052.750 kb on - strand, within Shew_2586 at 3052.794 kb on + strand, within Shew_2586 at 3052.800 kb on + strand, within Shew_2586 at 3052.924 kb on - strand, within Shew_2586 at 3053.282 kb on + strand at 3053.303 kb on + strand at 3053.395 kb on - strand at 3053.442 kb on + strand at 3053.502 kb on - strand at 3053.636 kb on + strand, within Shew_2587 at 3053.644 kb on - strand, within Shew_2587 at 3053.671 kb on - strand, within Shew_2587 at 3054.360 kb on - strand, within Shew_2587 at 3054.376 kb on - strand, within Shew_2587 at 3054.464 kb on - strand, within Shew_2587 at 3054.474 kb on - strand, within Shew_2587 at 3054.502 kb on + strand, within Shew_2587 at 3054.502 kb on + strand, within Shew_2587 at 3054.520 kb on - strand, within Shew_2587 at 3054.549 kb on - strand, within Shew_2587 at 3054.781 kb on + strand at 3054.911 kb on + strand, within Shew_2588 at 3054.991 kb on + strand, within Shew_2588 at 3054.999 kb on - strand, within Shew_2588 at 3055.244 kb on + strand at 3055.451 kb on - strand, within Shew_2589 at 3055.619 kb on - strand, within Shew_2589
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M4 remove 3,052,549 + Shew_2586 0.71 -0.0 3,052,596 - Shew_2586 0.72 -0.7 3,052,627 + Shew_2586 0.73 +0.2 3,052,750 - Shew_2586 0.77 +1.4 3,052,794 + Shew_2586 0.78 -1.9 3,052,800 + Shew_2586 0.79 -0.8 3,052,924 - Shew_2586 0.83 -0.7 3,053,282 + -2.6 3,053,303 + -0.2 3,053,395 - +2.2 3,053,442 + +0.3 3,053,502 - +1.2 3,053,636 + Shew_2587 0.13 +1.6 3,053,644 - Shew_2587 0.14 +0.7 3,053,671 - Shew_2587 0.16 +0.7 3,054,360 - Shew_2587 0.70 -0.5 3,054,376 - Shew_2587 0.71 +1.6 3,054,464 - Shew_2587 0.78 -0.1 3,054,474 - Shew_2587 0.79 +0.3 3,054,502 + Shew_2587 0.81 +0.2 3,054,502 + Shew_2587 0.81 +0.0 3,054,520 - Shew_2587 0.83 -0.3 3,054,549 - Shew_2587 0.85 +0.9 3,054,781 + +2.7 3,054,911 + Shew_2588 0.23 +1.7 3,054,991 + Shew_2588 0.42 -0.5 3,054,999 - Shew_2588 0.44 -0.3 3,055,244 + -3.2 3,055,451 - Shew_2589 0.24 -0.4 3,055,619 - Shew_2589 0.47 -0.3
Or see this region's nucleotide sequence