Strain Fitness in Shewanella loihica PV-4 around Shew_2230

Experiment: Motility M4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2229 and Shew_2230 are separated by 136 nucleotidesShew_2230 and Shew_2231 are separated by 543 nucleotides Shew_2229: Shew_2229 - ferrochelatase (RefSeq), at 2,605,318 to 2,606,331 _2229 Shew_2230: Shew_2230 - adenylate kinase (RefSeq), at 2,606,468 to 2,607,112 _2230 Shew_2231: Shew_2231 - thioredoxin domain-containing protein (RefSeq), at 2,607,656 to 2,608,495 _2231 Position (kb) 2606 2607 2608Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2605.578 kb on - strand, within Shew_2229at 2606.363 kb on - strandat 2607.993 kb on - strand, within Shew_2231

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility M4
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2,605,578 - Shew_2229 0.26 -5.9
2,606,363 - +1.3
2,607,993 - Shew_2231 0.40 -1.4

Or see this region's nucleotide sequence