Strain Fitness in Shewanella loihica PV-4 around Shew_1435

Experiment: Motility M4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1434 and phhA are separated by 418 nucleotidesphhA and phhB are separated by 46 nucleotidesphhB and Shew_1437 are separated by 233 nucleotides Shew_1434: Shew_1434 - UTP-glucose-1-phosphate uridylyltransferase GalU (RefSeq), at 1,648,633 to 1,649,553 _1434 Shew_1435: phhA - phenylalanine 4-monooxygenase (RefSeq), at 1,649,972 to 1,650,805 phhA Shew_1436: phhB - pterin-4-alpha-carbinolamine dehydratase (RefSeq), at 1,650,852 to 1,651,190 phhB Shew_1437: Shew_1437 - transcriptional regulator, TyrR (RefSeq), at 1,651,424 to 1,652,968 _1437 Position (kb) 1649 1650 1651Strain fitness (log2 ratio) -1 0 1at 1649.220 kb on - strand, within Shew_1434at 1650.898 kb on + strand, within phhBat 1651.142 kb on - strand, within phhBat 1651.505 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility M4
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1,649,220 - Shew_1434 0.64 +0.5
1,650,898 + phhB Shew_1436 0.14 +0.7
1,651,142 - phhB Shew_1436 0.86 +0.3
1,651,505 - -1.2

Or see this region's nucleotide sequence