Experiment: Motility M4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1386 and Shew_1387 are separated by 93 nucleotides Shew_1387 and Shew_1388 overlap by 8 nucleotides Shew_1388 and Shew_1389 are separated by 46 nucleotides
Shew_1386: Shew_1386 - CheA signal transduction histidine kinase (RefSeq), at 1,594,645 to 1,596,885
_1386
Shew_1387: Shew_1387 - chemotaxis-specific methylesterase (RefSeq), at 1,596,979 to 1,598,088
_1387
Shew_1388: Shew_1388 - hypothetical protein (RefSeq), at 1,598,081 to 1,598,704
_1388
Shew_1389: Shew_1389 - cobyrinic acid a,c-diamide synthase (RefSeq), at 1,598,751 to 1,599,542
_1389
Position (kb) 1596
1597
1598
1599 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2
3 at 1596.323 kb on - strand, within Shew_1386 at 1596.640 kb on - strand, within Shew_1386 at 1596.778 kb on - strand at 1596.912 kb on - strand at 1596.923 kb on + strand at 1597.785 kb on + strand, within Shew_1387 at 1598.107 kb on - strand at 1598.169 kb on + strand, within Shew_1388 at 1598.902 kb on - strand, within Shew_1389 at 1598.985 kb on - strand, within Shew_1389 at 1599.078 kb on - strand, within Shew_1389
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M4 remove 1,596,323 - Shew_1386 0.75 -3.1 1,596,640 - Shew_1386 0.89 -4.0 1,596,778 - -3.9 1,596,912 - -7.5 1,596,923 + +3.3 1,597,785 + Shew_1387 0.73 -5.4 1,598,107 - -2.9 1,598,169 + Shew_1388 0.14 -0.9 1,598,902 - Shew_1389 0.19 -1.3 1,598,985 - Shew_1389 0.30 -3.3 1,599,078 - Shew_1389 0.41 -2.3
Or see this region's nucleotide sequence