Strain Fitness in Shewanella loihica PV-4 around Shew_1048

Experiment: Motility M4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1047 and Shew_1048 are separated by 199 nucleotidesShew_1048 and Shew_1049 are separated by 39 nucleotidesShew_1049 and Shew_1050 are separated by 65 nucleotides Shew_1047: Shew_1047 - L-aspartate oxidase (RefSeq), at 1,209,447 to 1,211,060 _1047 Shew_1048: Shew_1048 - RNA polymerase sigma factor RpoE (RefSeq), at 1,211,260 to 1,211,838 _1048 Shew_1049: Shew_1049 - anti sigma-E protein, RseA (RefSeq), at 1,211,878 to 1,212,480 _1049 Shew_1050: Shew_1050 - sigma E regulatory protein, MucB/RseB (RefSeq), at 1,212,546 to 1,213,478 _1050 Position (kb) 1211 1212Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1211.746 kb on + strand, within Shew_1048at 1211.791 kb on - strandat 1212.453 kb on + strandat 1212.453 kb on + strandat 1212.758 kb on + strand, within Shew_1050at 1212.758 kb on + strand, within Shew_1050at 1212.758 kb on + strand, within Shew_1050

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility M4
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1,211,746 + Shew_1048 0.84 -3.8
1,211,791 - -1.8
1,212,453 + -0.3
1,212,453 + -0.8
1,212,758 + Shew_1050 0.23 +0.0
1,212,758 + Shew_1050 0.23 +0.7
1,212,758 + Shew_1050 0.23 -0.6

Or see this region's nucleotide sequence