Experiment: Motility M4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0835 and Shew_0836 are separated by 241 nucleotides Shew_0836 and Shew_0837 are separated by 25 nucleotides Shew_0837 and Shew_0838 are separated by 64 nucleotides Shew_0838 and Shew_0839 are separated by 13 nucleotides
Shew_0835: Shew_0835 - peptidase M1, membrane alanine aminopeptidase (RefSeq), at 956,689 to 959,337
_0835
Shew_0836: Shew_0836 - membrane lipoprotein lipid attachment site (RefSeq), at 959,579 to 960,172
_0836
Shew_0837: Shew_0837 - TPR repeat-containing protein (RefSeq), at 960,198 to 961,607
_0837
Shew_0838: Shew_0838 - SlyX family protein (RefSeq), at 961,672 to 961,884
_0838
Shew_0839: Shew_0839 - WD-40 repeat-containing protein (RefSeq), at 961,898 to 962,866
_0839
Position (kb) 960
961
962 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 959.198 kb on - strand at 959.275 kb on + strand at 959.297 kb on + strand at 959.397 kb on - strand at 959.992 kb on + strand, within Shew_0836 at 960.013 kb on - strand, within Shew_0836 at 960.412 kb on - strand, within Shew_0837 at 960.412 kb on - strand, within Shew_0837 at 960.504 kb on - strand, within Shew_0837 at 960.640 kb on - strand, within Shew_0837 at 960.640 kb on - strand, within Shew_0837 at 960.655 kb on - strand, within Shew_0837 at 961.199 kb on - strand, within Shew_0837 at 961.911 kb on + strand at 962.539 kb on - strand, within Shew_0839
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M4 remove 959,198 - +0.2 959,275 + +4.3 959,297 + +0.4 959,397 - -2.4 959,992 + Shew_0836 0.70 -2.5 960,013 - Shew_0836 0.73 +0.2 960,412 - Shew_0837 0.15 -2.0 960,412 - Shew_0837 0.15 +0.5 960,504 - Shew_0837 0.22 -0.3 960,640 - Shew_0837 0.31 -0.7 960,640 - Shew_0837 0.31 -0.2 960,655 - Shew_0837 0.32 -1.2 961,199 - Shew_0837 0.71 -1.8 961,911 + -0.1 962,539 - Shew_0839 0.66 -0.1
Or see this region's nucleotide sequence