Experiment: Motility M4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0833 and Shew_0834 are separated by 82 nucleotides Shew_0834 and Shew_0835 are separated by 145 nucleotides Shew_0835 and Shew_0836 are separated by 241 nucleotides Shew_0836 and Shew_0837 are separated by 25 nucleotides
Shew_0833: Shew_0833 - hypoxanthine-guanine phosphoribosyltransferase (RefSeq), at 955,682 to 956,248
_0833
Shew_0834: Shew_0834 - hypothetical protein (RefSeq), at 956,331 to 956,543
_0834
Shew_0835: Shew_0835 - peptidase M1, membrane alanine aminopeptidase (RefSeq), at 956,689 to 959,337
_0835
Shew_0836: Shew_0836 - membrane lipoprotein lipid attachment site (RefSeq), at 959,579 to 960,172
_0836
Shew_0837: Shew_0837 - TPR repeat-containing protein (RefSeq), at 960,198 to 961,607
_0837
Position (kb) 956
957
958
959
960 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 955.797 kb on + strand, within Shew_0833 at 956.214 kb on - strand at 956.293 kb on - strand at 956.329 kb on + strand at 956.455 kb on + strand, within Shew_0834 at 956.845 kb on - strand at 957.431 kb on + strand, within Shew_0835 at 957.453 kb on + strand, within Shew_0835 at 957.707 kb on + strand, within Shew_0835 at 957.707 kb on + strand, within Shew_0835 at 957.806 kb on - strand, within Shew_0835 at 957.841 kb on - strand, within Shew_0835 at 958.161 kb on + strand, within Shew_0835 at 958.161 kb on + strand, within Shew_0835 at 958.161 kb on + strand, within Shew_0835 at 958.169 kb on - strand, within Shew_0835 at 958.267 kb on + strand, within Shew_0835 at 958.343 kb on + strand, within Shew_0835 at 958.574 kb on + strand, within Shew_0835 at 958.755 kb on - strand, within Shew_0835 at 958.932 kb on + strand, within Shew_0835 at 959.103 kb on - strand at 959.146 kb on - strand at 959.146 kb on - strand at 959.171 kb on - strand at 959.198 kb on - strand at 959.275 kb on + strand at 959.297 kb on + strand at 959.397 kb on - strand at 959.992 kb on + strand, within Shew_0836 at 960.013 kb on - strand, within Shew_0836
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M4 remove 955,797 + Shew_0833 0.20 +1.1 956,214 - +0.2 956,293 - +0.2 956,329 + -0.0 956,455 + Shew_0834 0.58 -0.1 956,845 - +0.5 957,431 + Shew_0835 0.28 +0.3 957,453 + Shew_0835 0.29 -0.2 957,707 + Shew_0835 0.38 -0.4 957,707 + Shew_0835 0.38 +0.4 957,806 - Shew_0835 0.42 -0.9 957,841 - Shew_0835 0.43 +1.9 958,161 + Shew_0835 0.56 +0.2 958,161 + Shew_0835 0.56 +0.3 958,161 + Shew_0835 0.56 -0.3 958,169 - Shew_0835 0.56 +0.9 958,267 + Shew_0835 0.60 +0.8 958,343 + Shew_0835 0.62 +0.1 958,574 + Shew_0835 0.71 +0.9 958,755 - Shew_0835 0.78 -0.4 958,932 + Shew_0835 0.85 +0.6 959,103 - +0.2 959,146 - +0.3 959,146 - -0.2 959,171 - +0.3 959,198 - +0.2 959,275 + +4.3 959,297 + +0.4 959,397 - -2.4 959,992 + Shew_0836 0.70 -2.5 960,013 - Shew_0836 0.73 +0.2
Or see this region's nucleotide sequence