Experiment: Motility M4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0690 and Shew_0691 are separated by 189 nucleotides Shew_0691 and Shew_0692 are separated by 4 nucleotides
Shew_0690: Shew_0690 - endonuclease/exonuclease/phosphatase (RefSeq), at 783,798 to 784,871
_0690
Shew_0691: Shew_0691 - hypothetical protein (RefSeq), at 785,061 to 786,194
_0691
Shew_0692: Shew_0692 - hypothetical protein (RefSeq), at 786,199 to 787,119
_0692
Position (kb) 785
786
787 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 784.095 kb on + strand, within Shew_0690 at 784.137 kb on - strand, within Shew_0690 at 784.605 kb on - strand, within Shew_0690 at 784.683 kb on - strand, within Shew_0690 at 784.830 kb on + strand at 784.838 kb on - strand at 785.041 kb on - strand at 785.305 kb on - strand, within Shew_0691 at 785.305 kb on - strand, within Shew_0691 at 785.368 kb on + strand, within Shew_0691 at 785.368 kb on + strand, within Shew_0691 at 785.368 kb on + strand, within Shew_0691 at 785.376 kb on - strand, within Shew_0691 at 785.468 kb on - strand, within Shew_0691 at 785.558 kb on - strand, within Shew_0691 at 785.620 kb on + strand, within Shew_0691 at 785.620 kb on + strand, within Shew_0691 at 785.692 kb on - strand, within Shew_0691 at 785.977 kb on - strand, within Shew_0691 at 786.073 kb on + strand, within Shew_0691 at 786.091 kb on + strand at 786.504 kb on - strand, within Shew_0692 at 786.596 kb on - strand, within Shew_0692 at 786.755 kb on + strand, within Shew_0692 at 786.897 kb on + strand, within Shew_0692 at 787.174 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M4 remove 784,095 + Shew_0690 0.28 +0.9 784,137 - Shew_0690 0.32 +0.2 784,605 - Shew_0690 0.75 +2.1 784,683 - Shew_0690 0.82 +0.3 784,830 + -0.4 784,838 - +0.5 785,041 - -0.5 785,305 - Shew_0691 0.22 -0.9 785,305 - Shew_0691 0.22 -3.2 785,368 + Shew_0691 0.27 -2.0 785,368 + Shew_0691 0.27 +1.2 785,368 + Shew_0691 0.27 -0.4 785,376 - Shew_0691 0.28 +0.2 785,468 - Shew_0691 0.36 -0.2 785,558 - Shew_0691 0.44 +0.2 785,620 + Shew_0691 0.49 -1.7 785,620 + Shew_0691 0.49 +2.3 785,692 - Shew_0691 0.56 +0.3 785,977 - Shew_0691 0.81 -0.1 786,073 + Shew_0691 0.89 -0.5 786,091 + +0.2 786,504 - Shew_0692 0.33 -1.6 786,596 - Shew_0692 0.43 +0.1 786,755 + Shew_0692 0.60 -0.2 786,897 + Shew_0692 0.76 +0.3 787,174 + +0.8
Or see this region's nucleotide sequence