Experiment: Motility M4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0670 and Shew_0671 are separated by 44 nucleotides Shew_0671 and Shew_0672 are separated by 232 nucleotides
Shew_0670: Shew_0670 - hypothetical protein (RefSeq), at 762,619 to 764,085
_0670
Shew_0671: Shew_0671 - phospholipase A(1) (RefSeq), at 764,130 to 765,056
_0671
Shew_0672: Shew_0672 - uroporphyrin-III C-methyltransferase (RefSeq), at 765,289 to 766,110
_0672
Position (kb) 764
765
766 Strain fitness (log2 ratio) -2
-1
0
1 at 763.140 kb on + strand, within Shew_0670 at 763.140 kb on + strand, within Shew_0670 at 763.148 kb on - strand, within Shew_0670 at 763.378 kb on + strand, within Shew_0670 at 763.396 kb on - strand, within Shew_0670 at 763.438 kb on + strand, within Shew_0670 at 763.633 kb on - strand, within Shew_0670 at 763.749 kb on + strand, within Shew_0670 at 763.850 kb on + strand, within Shew_0670 at 763.935 kb on + strand, within Shew_0670 at 764.027 kb on - strand at 764.470 kb on - strand, within Shew_0671 at 764.536 kb on + strand, within Shew_0671 at 764.667 kb on + strand, within Shew_0671 at 764.758 kb on - strand, within Shew_0671 at 764.908 kb on - strand, within Shew_0671 at 764.952 kb on - strand, within Shew_0671 at 765.464 kb on + strand, within Shew_0672 at 765.504 kb on - strand, within Shew_0672 at 765.581 kb on - strand, within Shew_0672 at 765.960 kb on + strand, within Shew_0672
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M4 remove 763,140 + Shew_0670 0.36 -0.3 763,140 + Shew_0670 0.36 +0.1 763,148 - Shew_0670 0.36 +0.0 763,378 + Shew_0670 0.52 +0.3 763,396 - Shew_0670 0.53 +0.1 763,438 + Shew_0670 0.56 +1.1 763,633 - Shew_0670 0.69 -0.2 763,749 + Shew_0670 0.77 +0.6 763,850 + Shew_0670 0.84 -0.1 763,935 + Shew_0670 0.90 -1.9 764,027 - +0.7 764,470 - Shew_0671 0.37 -0.0 764,536 + Shew_0671 0.44 -1.5 764,667 + Shew_0671 0.58 -0.1 764,758 - Shew_0671 0.68 -0.2 764,908 - Shew_0671 0.84 -0.6 764,952 - Shew_0671 0.89 -0.1 765,464 + Shew_0672 0.21 +0.9 765,504 - Shew_0672 0.26 -2.0 765,581 - Shew_0672 0.36 +1.1 765,960 + Shew_0672 0.82 +0.4
Or see this region's nucleotide sequence