Strain Fitness in Shewanella loihica PV-4 around Shew_0493

Experiment: Motility M4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0492 and Shew_0493 are separated by 161 nucleotidesShew_0493 and Shew_0494 are separated by 243 nucleotides Shew_0492: Shew_0492 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 548,543 to 550,135 _0492 Shew_0493: Shew_0493 - hypothetical protein (RefSeq), at 550,297 to 550,803 _0493 Shew_0494: Shew_0494 - hypothetical protein (RefSeq), at 551,047 to 551,799 _0494 Position (kb) 550 551Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 549.307 kb on + strand, within Shew_0492at 549.469 kb on + strand, within Shew_0492at 549.510 kb on + strand, within Shew_0492at 549.863 kb on - strand, within Shew_0492at 549.863 kb on - strand, within Shew_0492at 549.959 kb on + strand, within Shew_0492at 549.967 kb on - strand, within Shew_0492at 550.217 kb on - strandat 550.224 kb on + strandat 550.268 kb on - strandat 550.616 kb on + strand, within Shew_0493at 550.616 kb on + strand, within Shew_0493at 550.917 kb on + strandat 551.301 kb on + strand, within Shew_0494at 551.302 kb on + strand, within Shew_0494at 551.505 kb on + strand, within Shew_0494at 551.722 kb on + strand, within Shew_0494at 551.722 kb on + strand, within Shew_0494

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility M4
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549,307 + Shew_0492 0.48 -0.2
549,469 + Shew_0492 0.58 +0.9
549,510 + Shew_0492 0.61 -1.9
549,863 - Shew_0492 0.83 +0.0
549,863 - Shew_0492 0.83 -0.4
549,959 + Shew_0492 0.89 +0.4
549,967 - Shew_0492 0.89 -1.3
550,217 - -0.9
550,224 + +0.8
550,268 - +1.0
550,616 + Shew_0493 0.63 -0.6
550,616 + Shew_0493 0.63 -2.9
550,917 + -1.1
551,301 + Shew_0494 0.34 -0.1
551,302 + Shew_0494 0.34 +2.3
551,505 + Shew_0494 0.61 -3.2
551,722 + Shew_0494 0.90 -1.5
551,722 + Shew_0494 0.90 -0.1

Or see this region's nucleotide sequence