Strain Fitness in Shewanella loihica PV-4 around Shew_0453

Experiment: Motility M4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0452 and Shew_0453 are separated by 13 nucleotidesShew_0453 and Shew_0454 are separated by 405 nucleotides Shew_0452: Shew_0452 - diguanylate cyclase (RefSeq), at 502,430 to 503,401 _0452 Shew_0453: Shew_0453 - response regulator receiver protein (RefSeq), at 503,415 to 504,410 _0453 Shew_0454: Shew_0454 - enoyl-CoA hydratase (RefSeq), at 504,816 to 505,625 _0454 Position (kb) 503 504 505Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 502.430 kb on + strandat 502.568 kb on + strand, within Shew_0452at 502.916 kb on + strand, within Shew_0452at 502.934 kb on + strand, within Shew_0452at 503.335 kb on + strandat 503.342 kb on + strandat 503.343 kb on - strandat 503.402 kb on + strandat 503.421 kb on - strandat 503.430 kb on + strandat 503.719 kb on + strand, within Shew_0453at 503.761 kb on - strand, within Shew_0453at 504.038 kb on + strand, within Shew_0453at 504.055 kb on + strand, within Shew_0453at 504.839 kb on + strandat 504.842 kb on - strandat 504.862 kb on + strandat 504.911 kb on + strand, within Shew_0454at 505.019 kb on - strand, within Shew_0454at 505.324 kb on + strand, within Shew_0454

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility M4
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502,430 + -0.7
502,568 + Shew_0452 0.14 +2.0
502,916 + Shew_0452 0.50 +1.0
502,934 + Shew_0452 0.52 +1.2
503,335 + +1.0
503,342 + +1.5
503,343 - -0.5
503,402 + -0.3
503,421 - +1.3
503,430 + -2.3
503,719 + Shew_0453 0.31 +1.5
503,761 - Shew_0453 0.35 +2.9
504,038 + Shew_0453 0.63 -2.2
504,055 + Shew_0453 0.64 +1.7
504,839 + -0.1
504,842 - -1.4
504,862 + -0.4
504,911 + Shew_0454 0.12 +1.1
505,019 - Shew_0454 0.25 +5.6
505,324 + Shew_0454 0.63 -1.6

Or see this region's nucleotide sequence