Experiment: Motility M4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0314 and Shew_0315 are separated by 284 nucleotides Shew_0315 and Shew_0316 overlap by 4 nucleotides
Shew_0314: Shew_0314 - putative outer membrane adhesin like proteiin (RefSeq), at 355,622 to 360,283
_0314
Shew_0315: Shew_0315 - HemY domain-containing protein (RefSeq), at 360,568 to 361,734
_0315
Shew_0316: Shew_0316 - protein of unknown function DUF513, hemX (RefSeq), at 361,731 to 362,873
_0316
Position (kb) 360
361
362 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 359.624 kb on + strand, within Shew_0314 at 359.626 kb on - strand, within Shew_0314 at 359.640 kb on + strand, within Shew_0314 at 359.666 kb on + strand, within Shew_0314 at 359.690 kb on - strand, within Shew_0314 at 359.690 kb on - strand, within Shew_0314 at 359.876 kb on + strand at 360.218 kb on - strand at 360.228 kb on + strand at 360.246 kb on + strand at 360.287 kb on - strand at 360.365 kb on + strand at 360.365 kb on - strand at 360.365 kb on + strand at 360.365 kb on + strand at 360.373 kb on - strand at 360.373 kb on - strand at 360.373 kb on - strand at 360.373 kb on - strand at 360.483 kb on - strand at 361.178 kb on + strand, within Shew_0315 at 361.453 kb on + strand, within Shew_0315 at 361.770 kb on + strand at 361.962 kb on - strand, within Shew_0316 at 362.185 kb on - strand, within Shew_0316 at 362.185 kb on - strand, within Shew_0316 at 362.234 kb on - strand, within Shew_0316 at 362.452 kb on + strand, within Shew_0316 at 362.558 kb on + strand, within Shew_0316
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M4 remove 359,624 + Shew_0314 0.86 +1.5 359,626 - Shew_0314 0.86 -0.1 359,640 + Shew_0314 0.86 -0.8 359,666 + Shew_0314 0.87 -0.4 359,690 - Shew_0314 0.87 -1.2 359,690 - Shew_0314 0.87 -0.3 359,876 + +0.1 360,218 - -0.4 360,228 + -0.6 360,246 + -3.7 360,287 - -0.6 360,365 + -0.7 360,365 - -0.6 360,365 + +0.5 360,365 + -1.2 360,373 - +0.3 360,373 - -2.5 360,373 - +1.6 360,373 - -0.0 360,483 - -0.4 361,178 + Shew_0315 0.52 -1.6 361,453 + Shew_0315 0.76 -0.2 361,770 + +0.9 361,962 - Shew_0316 0.20 -0.5 362,185 - Shew_0316 0.40 -0.4 362,185 - Shew_0316 0.40 -2.1 362,234 - Shew_0316 0.44 +1.6 362,452 + Shew_0316 0.63 -0.4 362,558 + Shew_0316 0.72 -0.9
Or see this region's nucleotide sequence