Experiment: Motility M4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0124 and Shew_0125 are separated by 9 nucleotides Shew_0125 and Shew_0126 are separated by 398 nucleotides Shew_0126 and Shew_0127 overlap by 4 nucleotides
Shew_0124: Shew_0124 - cytochrome-c oxidase (RefSeq), at 133,433 to 135,043
_0124
Shew_0125: Shew_0125 - cytochrome c oxidase, subunit II (RefSeq), at 135,053 to 136,618
_0125
Shew_0126: Shew_0126 - hypothetical protein (RefSeq), at 137,017 to 137,526
_0126
Shew_0127: Shew_0127 - LexA repressor (RefSeq), at 137,523 to 138,140
_0127
Position (kb) 135
136
137 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 134.117 kb on - strand, within Shew_0124 at 134.408 kb on - strand, within Shew_0124 at 134.519 kb on - strand, within Shew_0124 at 134.519 kb on - strand, within Shew_0124 at 134.867 kb on - strand, within Shew_0124 at 134.993 kb on - strand at 135.104 kb on - strand at 135.176 kb on - strand at 135.194 kb on - strand at 135.194 kb on - strand at 135.368 kb on + strand, within Shew_0125 at 135.810 kb on + strand, within Shew_0125 at 135.818 kb on - strand, within Shew_0125 at 135.989 kb on + strand, within Shew_0125 at 136.060 kb on + strand, within Shew_0125 at 136.142 kb on + strand, within Shew_0125 at 136.164 kb on + strand, within Shew_0125 at 136.197 kb on + strand, within Shew_0125 at 136.373 kb on - strand, within Shew_0125 at 136.407 kb on + strand, within Shew_0125 at 136.447 kb on + strand, within Shew_0125 at 136.668 kb on - strand at 137.151 kb on + strand, within Shew_0126 at 137.379 kb on + strand, within Shew_0126 at 137.415 kb on + strand, within Shew_0126 at 137.423 kb on - strand, within Shew_0126 at 137.551 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M4 remove 134,117 - Shew_0124 0.42 +0.2 134,408 - Shew_0124 0.61 +0.5 134,519 - Shew_0124 0.67 -0.3 134,519 - Shew_0124 0.67 +0.6 134,867 - Shew_0124 0.89 +0.1 134,993 - +1.1 135,104 - +0.7 135,176 - +0.6 135,194 - -0.1 135,194 - -1.6 135,368 + Shew_0125 0.20 -0.4 135,810 + Shew_0125 0.48 -0.4 135,818 - Shew_0125 0.49 -0.3 135,989 + Shew_0125 0.60 +0.4 136,060 + Shew_0125 0.64 +0.2 136,142 + Shew_0125 0.70 -0.3 136,164 + Shew_0125 0.71 +0.4 136,197 + Shew_0125 0.73 -1.9 136,373 - Shew_0125 0.84 -0.1 136,407 + Shew_0125 0.86 -0.7 136,447 + Shew_0125 0.89 -3.0 136,668 - -0.8 137,151 + Shew_0126 0.26 -0.1 137,379 + Shew_0126 0.71 +0.4 137,415 + Shew_0126 0.78 +0.8 137,423 - Shew_0126 0.80 -1.2 137,551 + -2.0
Or see this region's nucleotide sequence