Experiment: Motility M4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0069 and Shew_0070 are separated by 178 nucleotides Shew_0070 and Shew_0071 are separated by 204 nucleotides
Shew_0069: Shew_0069 - hypothetical protein (RefSeq), at 82,400 to 83,503
_0069
Shew_0070: Shew_0070 - iron-containing alcohol dehydrogenase (RefSeq), at 83,682 to 84,845
_0070
Shew_0071: Shew_0071 - AraC family transcriptional regulator (RefSeq), at 85,050 to 85,916
_0071
Position (kb) 83
84
85 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 82.853 kb on - strand, within Shew_0069 at 82.881 kb on - strand, within Shew_0069 at 83.228 kb on + strand, within Shew_0069 at 83.235 kb on - strand, within Shew_0069 at 83.235 kb on - strand, within Shew_0069 at 83.309 kb on - strand, within Shew_0069 at 83.438 kb on - strand at 83.453 kb on + strand at 83.749 kb on + strand at 83.931 kb on - strand, within Shew_0070 at 83.946 kb on + strand, within Shew_0070 at 83.972 kb on - strand, within Shew_0070 at 84.106 kb on + strand, within Shew_0070 at 84.204 kb on + strand, within Shew_0070 at 84.270 kb on - strand, within Shew_0070 at 84.282 kb on - strand, within Shew_0070 at 84.519 kb on - strand, within Shew_0070 at 84.540 kb on - strand, within Shew_0070 at 84.624 kb on - strand, within Shew_0070 at 84.688 kb on + strand, within Shew_0070 at 84.742 kb on - strand at 84.795 kb on - strand at 84.933 kb on - strand at 85.084 kb on + strand at 85.118 kb on - strand at 85.120 kb on + strand at 85.259 kb on + strand, within Shew_0071 at 85.267 kb on - strand, within Shew_0071 at 85.286 kb on + strand, within Shew_0071 at 85.385 kb on + strand, within Shew_0071 at 85.398 kb on - strand, within Shew_0071 at 85.460 kb on + strand, within Shew_0071 at 85.562 kb on + strand, within Shew_0071 at 85.570 kb on - strand, within Shew_0071 at 85.570 kb on - strand, within Shew_0071 at 85.585 kb on - strand, within Shew_0071 at 85.660 kb on + strand, within Shew_0071 at 85.696 kb on - strand, within Shew_0071 at 85.720 kb on + strand, within Shew_0071 at 85.728 kb on - strand, within Shew_0071 at 85.801 kb on + strand, within Shew_0071
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M4 remove 82,853 - Shew_0069 0.41 -0.0 82,881 - Shew_0069 0.44 -0.7 83,228 + Shew_0069 0.75 -0.5 83,235 - Shew_0069 0.76 +0.2 83,235 - Shew_0069 0.76 -0.2 83,309 - Shew_0069 0.82 +1.9 83,438 - +0.3 83,453 + -0.3 83,749 + -0.3 83,931 - Shew_0070 0.21 -0.3 83,946 + Shew_0070 0.23 -0.0 83,972 - Shew_0070 0.25 -0.1 84,106 + Shew_0070 0.36 -0.6 84,204 + Shew_0070 0.45 -3.8 84,270 - Shew_0070 0.51 -1.0 84,282 - Shew_0070 0.52 -0.2 84,519 - Shew_0070 0.72 -0.2 84,540 - Shew_0070 0.74 +0.0 84,624 - Shew_0070 0.81 +0.3 84,688 + Shew_0070 0.86 +0.7 84,742 - +0.3 84,795 - -0.1 84,933 - +0.3 85,084 + -1.6 85,118 - +0.4 85,120 + +1.5 85,259 + Shew_0071 0.24 +0.5 85,267 - Shew_0071 0.25 +0.7 85,286 + Shew_0071 0.27 +0.3 85,385 + Shew_0071 0.39 +0.3 85,398 - Shew_0071 0.40 -0.1 85,460 + Shew_0071 0.47 -2.1 85,562 + Shew_0071 0.59 +0.5 85,570 - Shew_0071 0.60 +0.0 85,570 - Shew_0071 0.60 -0.9 85,585 - Shew_0071 0.62 +0.1 85,660 + Shew_0071 0.70 +0.2 85,696 - Shew_0071 0.75 +0.1 85,720 + Shew_0071 0.77 -1.3 85,728 - Shew_0071 0.78 -1.2 85,801 + Shew_0071 0.87 +0.2
Or see this region's nucleotide sequence