Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3824

Experiment: m.b. Benzalkonium Chloride 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3822 and Dshi_3823 are separated by 7 nucleotidesDshi_3823 and Dshi_3824 are separated by 2 nucleotidesDshi_3824 and Dshi_3825 are separated by 22 nucleotidesDshi_3825 and Dshi_3826 are separated by 212 nucleotides Dshi_3822: Dshi_3822 - phenylacetate-CoA oxygenase/reductase, PaaK subunit (RefSeq), at 28,782 to 29,852 _3822 Dshi_3823: Dshi_3823 - transcriptional regulator, TetR family (RefSeq), at 29,860 to 30,456 _3823 Dshi_3824: Dshi_3824 - phenylacetate-CoA ligase (RefSeq), at 30,459 to 31,769 _3824 Dshi_3825: Dshi_3825 - phenylacetic acid degradation protein PaaD (RefSeq), at 31,792 to 32,217 _3825 Dshi_3826: Dshi_3826 - 3-hydroxyacyl-CoA dehydrogenase NAD-binding (RefSeq), at 32,430 to 34,451 _3826 Position (kb) 30 31 32Strain fitness (log2 ratio) -1 0 1at 29.565 kb on + strand, within Dshi_3822at 29.617 kb on + strand, within Dshi_3822at 29.666 kb on - strand, within Dshi_3822at 29.710 kb on - strand, within Dshi_3822at 29.739 kb on + strand, within Dshi_3822at 29.815 kb on - strandat 30.060 kb on - strand, within Dshi_3823at 30.065 kb on - strand, within Dshi_3823at 30.156 kb on + strand, within Dshi_3823at 30.171 kb on + strand, within Dshi_3823at 30.179 kb on + strand, within Dshi_3823at 30.179 kb on - strand, within Dshi_3823at 30.212 kb on + strand, within Dshi_3823at 30.259 kb on - strand, within Dshi_3823at 30.263 kb on + strand, within Dshi_3823at 30.493 kb on + strandat 30.493 kb on + strandat 30.559 kb on - strandat 30.569 kb on - strandat 30.719 kb on + strand, within Dshi_3824at 30.740 kb on + strand, within Dshi_3824at 30.825 kb on + strand, within Dshi_3824at 30.895 kb on - strand, within Dshi_3824at 30.991 kb on + strand, within Dshi_3824at 31.058 kb on - strand, within Dshi_3824at 31.113 kb on - strand, within Dshi_3824at 31.125 kb on - strand, within Dshi_3824at 31.163 kb on - strand, within Dshi_3824at 31.213 kb on - strand, within Dshi_3824at 31.233 kb on + strand, within Dshi_3824at 31.340 kb on + strand, within Dshi_3824at 31.376 kb on + strand, within Dshi_3824at 31.446 kb on + strand, within Dshi_3824at 31.471 kb on - strand, within Dshi_3824at 31.482 kb on + strand, within Dshi_3824at 31.501 kb on - strand, within Dshi_3824at 31.698 kb on - strandat 31.747 kb on - strandat 31.773 kb on + strandat 31.784 kb on + strandat 31.810 kb on + strandat 31.858 kb on + strand, within Dshi_3825at 31.944 kb on + strand, within Dshi_3825at 31.995 kb on + strand, within Dshi_3825at 32.083 kb on - strand, within Dshi_3825at 32.094 kb on + strand, within Dshi_3825at 32.094 kb on + strand, within Dshi_3825at 32.094 kb on + strand, within Dshi_3825at 32.102 kb on - strand, within Dshi_3825at 32.148 kb on + strand, within Dshi_3825at 32.308 kb on + strandat 32.704 kb on + strand, within Dshi_3826at 32.721 kb on + strand, within Dshi_3826

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0005 mg/ml
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29,565 + Dshi_3822 0.73 -1.1
29,617 + Dshi_3822 0.78 +0.1
29,666 - Dshi_3822 0.83 -0.3
29,710 - Dshi_3822 0.87 -0.2
29,739 + Dshi_3822 0.89 -0.1
29,815 - +0.3
30,060 - Dshi_3823 0.34 -0.7
30,065 - Dshi_3823 0.34 -0.6
30,156 + Dshi_3823 0.50 +0.0
30,171 + Dshi_3823 0.52 -0.2
30,179 + Dshi_3823 0.53 -0.7
30,179 - Dshi_3823 0.53 -0.0
30,212 + Dshi_3823 0.59 -1.0
30,259 - Dshi_3823 0.67 -0.5
30,263 + Dshi_3823 0.68 +0.4
30,493 + +0.2
30,493 + -0.8
30,559 - +0.8
30,569 - -0.2
30,719 + Dshi_3824 0.20 +0.3
30,740 + Dshi_3824 0.21 -0.5
30,825 + Dshi_3824 0.28 -0.3
30,895 - Dshi_3824 0.33 +0.0
30,991 + Dshi_3824 0.41 -0.2
31,058 - Dshi_3824 0.46 +0.2
31,113 - Dshi_3824 0.50 -0.1
31,125 - Dshi_3824 0.51 -0.0
31,163 - Dshi_3824 0.54 +0.5
31,213 - Dshi_3824 0.58 +1.1
31,233 + Dshi_3824 0.59 -0.2
31,340 + Dshi_3824 0.67 -1.0
31,376 + Dshi_3824 0.70 -0.2
31,446 + Dshi_3824 0.75 +0.4
31,471 - Dshi_3824 0.77 +0.3
31,482 + Dshi_3824 0.78 -0.3
31,501 - Dshi_3824 0.79 -0.2
31,698 - +0.3
31,747 - +0.2
31,773 + -0.7
31,784 + -0.4
31,810 + -0.2
31,858 + Dshi_3825 0.15 +0.5
31,944 + Dshi_3825 0.36 +0.5
31,995 + Dshi_3825 0.48 +0.8
32,083 - Dshi_3825 0.68 +0.1
32,094 + Dshi_3825 0.71 +0.2
32,094 + Dshi_3825 0.71 -0.5
32,094 + Dshi_3825 0.71 -0.3
32,102 - Dshi_3825 0.73 -0.5
32,148 + Dshi_3825 0.84 -0.3
32,308 + +0.2
32,704 + Dshi_3826 0.14 -0.5
32,721 + Dshi_3826 0.14 +1.3

Or see this region's nucleotide sequence