Experiment: m.b. Benzalkonium Chloride 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3656 and Dshi_3657 overlap by 14 nucleotides Dshi_3657 and Dshi_3658 are separated by 563 nucleotides Dshi_3658 and Dshi_3659 are separated by 200 nucleotides
Dshi_3656: Dshi_3656 - Relaxase/mobilization nuclease family protein (RefSeq), at 57,373 to 59,706
_3656
Dshi_3657: Dshi_3657 - transposase IS3/IS911 family protein (RefSeq), at 59,693 to 60,274
_3657
Dshi_3658: Dshi_3658 - hypothetical protein (RefSeq), at 60,838 to 61,044
_3658
Dshi_3659: Dshi_3659 - hypothetical protein (RefSeq), at 61,245 to 61,547
_3659
Position (kb)
59
60
61 Strain fitness (log2 ratio)
-1
0
1
2 at 58.695 kb on + strand, within Dshi_3656 at 58.735 kb on - strand, within Dshi_3656 at 58.796 kb on + strand, within Dshi_3656 at 59.023 kb on - strand, within Dshi_3656 at 59.028 kb on - strand, within Dshi_3656 at 59.047 kb on - strand, within Dshi_3656 at 59.312 kb on + strand, within Dshi_3656 at 59.312 kb on + strand, within Dshi_3656 at 59.312 kb on + strand, within Dshi_3656 at 59.347 kb on + strand, within Dshi_3656 at 59.369 kb on - strand, within Dshi_3656 at 59.369 kb on - strand, within Dshi_3656 at 59.374 kb on - strand, within Dshi_3656 at 59.417 kb on + strand, within Dshi_3656 at 59.418 kb on - strand, within Dshi_3656 at 59.430 kb on - strand, within Dshi_3656 at 59.432 kb on + strand, within Dshi_3656 at 59.535 kb on + strand at 59.546 kb on + strand at 59.555 kb on + strand at 59.563 kb on - strand at 59.563 kb on - strand at 59.591 kb on + strand at 59.605 kb on - strand at 59.654 kb on - strand at 59.681 kb on + strand at 59.714 kb on + strand at 59.716 kb on + strand at 59.866 kb on - strand, within Dshi_3657 at 59.871 kb on + strand, within Dshi_3657 at 59.879 kb on - strand, within Dshi_3657 at 59.888 kb on - strand, within Dshi_3657 at 60.034 kb on - strand, within Dshi_3657 at 60.044 kb on + strand, within Dshi_3657 at 60.047 kb on - strand, within Dshi_3657 at 60.085 kb on + strand, within Dshi_3657 at 60.093 kb on - strand, within Dshi_3657 at 60.093 kb on - strand, within Dshi_3657 at 60.093 kb on - strand, within Dshi_3657 at 60.217 kb on - strand at 60.231 kb on + strand at 60.233 kb on + strand at 60.250 kb on - strand at 60.300 kb on - strand at 60.308 kb on + strand at 60.311 kb on - strand at 60.384 kb on + strand at 60.392 kb on - strand at 60.392 kb on - strand at 60.409 kb on + strand at 60.432 kb on + strand at 60.449 kb on + strand at 60.465 kb on - strand at 60.502 kb on + strand at 60.566 kb on + strand at 60.573 kb on - strand at 60.573 kb on - strand at 60.574 kb on - strand at 60.673 kb on + strand at 60.734 kb on - strand at 60.738 kb on + strand at 60.921 kb on + strand, within Dshi_3658 at 60.979 kb on + strand, within Dshi_3658 at 61.006 kb on - strand, within Dshi_3658 at 61.083 kb on - strand at 61.120 kb on + strand at 61.178 kb on + strand at 61.184 kb on + strand at 61.189 kb on + strand at 61.238 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0005 mg/ml remove 58,695 + Dshi_3656 0.57 +0.0 58,735 - Dshi_3656 0.58 -0.7 58,796 + Dshi_3656 0.61 +0.7 59,023 - Dshi_3656 0.71 -0.5 59,028 - Dshi_3656 0.71 +0.5 59,047 - Dshi_3656 0.72 -0.2 59,312 + Dshi_3656 0.83 -0.8 59,312 + Dshi_3656 0.83 +1.3 59,312 + Dshi_3656 0.83 +0.3 59,347 + Dshi_3656 0.85 +0.9 59,369 - Dshi_3656 0.86 +0.6 59,369 - Dshi_3656 0.86 +0.5 59,374 - Dshi_3656 0.86 -1.0 59,417 + Dshi_3656 0.88 -0.1 59,418 - Dshi_3656 0.88 +0.2 59,430 - Dshi_3656 0.88 +0.6 59,432 + Dshi_3656 0.88 -0.1 59,535 + +0.3 59,546 + +0.3 59,555 + +0.1 59,563 - -0.2 59,563 - +0.1 59,591 + -0.4 59,605 - -1.3 59,654 - -0.6 59,681 + +0.5 59,714 + +0.6 59,716 + +0.8 59,866 - Dshi_3657 0.30 +0.1 59,871 + Dshi_3657 0.31 -0.6 59,879 - Dshi_3657 0.32 +2.7 59,888 - Dshi_3657 0.34 -0.5 60,034 - Dshi_3657 0.59 -0.1 60,044 + Dshi_3657 0.60 +0.4 60,047 - Dshi_3657 0.61 -0.0 60,085 + Dshi_3657 0.67 +0.3 60,093 - Dshi_3657 0.69 -1.1 60,093 - Dshi_3657 0.69 +1.2 60,093 - Dshi_3657 0.69 -1.3 60,217 - -0.1 60,231 + +0.3 60,233 + -0.8 60,250 - -0.9 60,300 - -0.6 60,308 + +1.2 60,311 - -0.0 60,384 + -0.1 60,392 - -0.5 60,392 - +0.0 60,409 + -0.1 60,432 + -0.3 60,449 + +0.0 60,465 - -0.1 60,502 + -0.4 60,566 + +0.6 60,573 - -0.3 60,573 - -0.2 60,574 - +0.7 60,673 + -0.9 60,734 - +0.2 60,738 + -0.4 60,921 + Dshi_3658 0.40 +0.3 60,979 + Dshi_3658 0.68 -0.9 61,006 - Dshi_3658 0.81 -0.1 61,083 - +0.0 61,120 + -0.0 61,178 + -0.5 61,184 + +0.4 61,189 + +0.7 61,238 - -0.2
Or see this region's nucleotide sequence