Experiment: m.b. Benzalkonium Chloride 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3530 and Dshi_3531 are separated by 97 nucleotides Dshi_3531 and Dshi_3532 are separated by 42 nucleotides
Dshi_3530: Dshi_3530 - bacteriochlorophyll/chlorophyll synthetase (RefSeq), at 3,710,051 to 3,710,956
_3530
Dshi_3531: Dshi_3531 - transcriptional regulator, Fis family (RefSeq), at 3,711,054 to 3,712,484
_3531
Dshi_3532: Dshi_3532 - cobalamin B12-binding domain protein (RefSeq), at 3,712,527 to 3,713,387
_3532
Position (kb)
3711
3712
3713 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3710.125 kb on + strand at 3710.175 kb on + strand, within Dshi_3530 at 3710.330 kb on + strand, within Dshi_3530 at 3710.338 kb on - strand, within Dshi_3530 at 3710.500 kb on - strand, within Dshi_3530 at 3710.520 kb on - strand, within Dshi_3530 at 3710.561 kb on - strand, within Dshi_3530 at 3710.670 kb on - strand, within Dshi_3530 at 3710.783 kb on - strand, within Dshi_3530 at 3710.816 kb on - strand, within Dshi_3530 at 3710.830 kb on - strand, within Dshi_3530 at 3710.830 kb on - strand, within Dshi_3530 at 3710.834 kb on + strand, within Dshi_3530 at 3710.835 kb on - strand, within Dshi_3530 at 3710.852 kb on + strand, within Dshi_3530 at 3710.879 kb on + strand at 3710.894 kb on - strand at 3710.894 kb on - strand at 3710.905 kb on - strand at 3710.979 kb on - strand at 3710.991 kb on + strand at 3711.769 kb on - strand, within Dshi_3531 at 3711.820 kb on + strand, within Dshi_3531 at 3711.856 kb on - strand, within Dshi_3531 at 3712.361 kb on - strand at 3712.643 kb on - strand, within Dshi_3532 at 3712.643 kb on - strand, within Dshi_3532 at 3712.743 kb on - strand, within Dshi_3532 at 3712.768 kb on - strand, within Dshi_3532 at 3712.775 kb on + strand, within Dshi_3532 at 3712.792 kb on + strand, within Dshi_3532 at 3712.868 kb on + strand, within Dshi_3532 at 3712.878 kb on + strand, within Dshi_3532 at 3713.013 kb on + strand, within Dshi_3532 at 3713.029 kb on + strand, within Dshi_3532 at 3713.049 kb on - strand, within Dshi_3532 at 3713.123 kb on - strand, within Dshi_3532 at 3713.166 kb on - strand, within Dshi_3532 at 3713.294 kb on + strand, within Dshi_3532 at 3713.302 kb on - strand at 3713.302 kb on - strand at 3713.327 kb on + strand at 3713.342 kb on + strand at 3713.350 kb on - strand at 3713.360 kb on - strand at 3713.360 kb on - strand at 3713.371 kb on - strand at 3713.417 kb on - strand at 3713.455 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0005 mg/ml remove 3,710,125 + -0.4 3,710,175 + Dshi_3530 0.14 -0.2 3,710,330 + Dshi_3530 0.31 -0.7 3,710,338 - Dshi_3530 0.32 -0.5 3,710,500 - Dshi_3530 0.50 +0.4 3,710,520 - Dshi_3530 0.52 -0.8 3,710,561 - Dshi_3530 0.56 -0.6 3,710,670 - Dshi_3530 0.68 -0.4 3,710,783 - Dshi_3530 0.81 +0.3 3,710,816 - Dshi_3530 0.84 -2.0 3,710,830 - Dshi_3530 0.86 -0.2 3,710,830 - Dshi_3530 0.86 -0.8 3,710,834 + Dshi_3530 0.86 -1.2 3,710,835 - Dshi_3530 0.87 -0.2 3,710,852 + Dshi_3530 0.88 -1.4 3,710,879 + -0.1 3,710,894 - +0.3 3,710,894 - -1.3 3,710,905 - -0.4 3,710,979 - -0.0 3,710,991 + -0.8 3,711,769 - Dshi_3531 0.50 -4.6 3,711,820 + Dshi_3531 0.54 -2.0 3,711,856 - Dshi_3531 0.56 -2.8 3,712,361 - -3.7 3,712,643 - Dshi_3532 0.13 -1.6 3,712,643 - Dshi_3532 0.13 +1.0 3,712,743 - Dshi_3532 0.25 +0.7 3,712,768 - Dshi_3532 0.28 +0.5 3,712,775 + Dshi_3532 0.29 -0.8 3,712,792 + Dshi_3532 0.31 +1.0 3,712,868 + Dshi_3532 0.40 -0.1 3,712,878 + Dshi_3532 0.41 +1.0 3,713,013 + Dshi_3532 0.56 +0.7 3,713,029 + Dshi_3532 0.58 +0.5 3,713,049 - Dshi_3532 0.61 +3.0 3,713,123 - Dshi_3532 0.69 +1.0 3,713,166 - Dshi_3532 0.74 +1.1 3,713,294 + Dshi_3532 0.89 +1.2 3,713,302 - +1.2 3,713,302 - +1.3 3,713,327 + -0.1 3,713,342 + +1.0 3,713,350 - +1.6 3,713,360 - +1.0 3,713,360 - +1.2 3,713,371 - +1.4 3,713,417 - +1.0 3,713,455 + +0.5
Or see this region's nucleotide sequence