Experiment: m.b. Benzalkonium Chloride 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3065 and Dshi_3066 are separated by 319 nucleotides Dshi_3066 and Dshi_3067 are separated by 100 nucleotides
Dshi_3065: Dshi_3065 - diguanylate phosphodiesterase (RefSeq), at 3,233,338 to 3,234,183
_3065
Dshi_3066: Dshi_3066 - acetyl-CoA acetyltransferase (RefSeq), at 3,234,503 to 3,235,678
_3066
Dshi_3067: Dshi_3067 - acetoacetyl-CoA reductase (RefSeq), at 3,235,779 to 3,236,501
_3067
Position (kb)
3234
3235
3236 Strain fitness (log2 ratio)
-1
0
1 at 3233.511 kb on + strand, within Dshi_3065 at 3233.528 kb on + strand, within Dshi_3065 at 3233.551 kb on + strand, within Dshi_3065 at 3233.576 kb on - strand, within Dshi_3065 at 3233.659 kb on - strand, within Dshi_3065 at 3233.711 kb on + strand, within Dshi_3065 at 3233.745 kb on - strand, within Dshi_3065 at 3233.822 kb on - strand, within Dshi_3065 at 3233.863 kb on + strand, within Dshi_3065 at 3233.863 kb on + strand, within Dshi_3065 at 3233.864 kb on - strand, within Dshi_3065 at 3233.893 kb on + strand, within Dshi_3065 at 3233.923 kb on - strand, within Dshi_3065 at 3233.973 kb on + strand, within Dshi_3065 at 3233.995 kb on + strand, within Dshi_3065 at 3234.015 kb on - strand, within Dshi_3065 at 3234.116 kb on - strand at 3234.137 kb on + strand at 3234.150 kb on - strand at 3234.152 kb on + strand at 3234.182 kb on - strand at 3234.217 kb on + strand at 3234.255 kb on - strand at 3234.296 kb on + strand at 3234.365 kb on - strand at 3234.370 kb on - strand at 3234.424 kb on - strand at 3234.437 kb on + strand at 3234.437 kb on + strand at 3234.573 kb on + strand at 3234.584 kb on + strand at 3234.768 kb on + strand, within Dshi_3066 at 3234.869 kb on + strand, within Dshi_3066 at 3234.877 kb on - strand, within Dshi_3066 at 3234.890 kb on + strand, within Dshi_3066 at 3234.966 kb on + strand, within Dshi_3066 at 3234.979 kb on - strand, within Dshi_3066 at 3235.156 kb on - strand, within Dshi_3066 at 3235.407 kb on - strand, within Dshi_3066 at 3235.460 kb on + strand, within Dshi_3066 at 3235.460 kb on + strand, within Dshi_3066 at 3235.473 kb on - strand, within Dshi_3066 at 3235.489 kb on + strand, within Dshi_3066 at 3235.855 kb on + strand, within Dshi_3067 at 3235.863 kb on - strand, within Dshi_3067 at 3235.930 kb on - strand, within Dshi_3067 at 3236.036 kb on - strand, within Dshi_3067 at 3236.065 kb on - strand, within Dshi_3067 at 3236.134 kb on - strand, within Dshi_3067 at 3236.238 kb on + strand, within Dshi_3067 at 3236.526 kb on - strand at 3236.645 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0005 mg/ml remove 3,233,511 + Dshi_3065 0.20 -0.5 3,233,528 + Dshi_3065 0.22 +1.6 3,233,551 + Dshi_3065 0.25 +1.0 3,233,576 - Dshi_3065 0.28 -0.6 3,233,659 - Dshi_3065 0.38 +0.8 3,233,711 + Dshi_3065 0.44 -0.3 3,233,745 - Dshi_3065 0.48 +0.2 3,233,822 - Dshi_3065 0.57 -0.1 3,233,863 + Dshi_3065 0.62 +0.3 3,233,863 + Dshi_3065 0.62 +0.7 3,233,864 - Dshi_3065 0.62 +0.7 3,233,893 + Dshi_3065 0.66 +0.3 3,233,923 - Dshi_3065 0.69 +1.3 3,233,973 + Dshi_3065 0.75 +0.4 3,233,995 + Dshi_3065 0.78 +0.1 3,234,015 - Dshi_3065 0.80 -0.2 3,234,116 - +0.0 3,234,137 + +1.0 3,234,150 - -0.0 3,234,152 + -0.1 3,234,182 - +0.7 3,234,217 + -0.9 3,234,255 - +0.8 3,234,296 + +0.4 3,234,365 - -0.2 3,234,370 - +0.4 3,234,424 - -0.1 3,234,437 + -0.4 3,234,437 + -1.0 3,234,573 + +0.7 3,234,584 + -0.6 3,234,768 + Dshi_3066 0.23 -0.1 3,234,869 + Dshi_3066 0.31 -0.3 3,234,877 - Dshi_3066 0.32 -0.2 3,234,890 + Dshi_3066 0.33 +0.2 3,234,966 + Dshi_3066 0.39 +0.2 3,234,979 - Dshi_3066 0.40 -0.2 3,235,156 - Dshi_3066 0.56 +0.6 3,235,407 - Dshi_3066 0.77 -0.6 3,235,460 + Dshi_3066 0.81 +1.4 3,235,460 + Dshi_3066 0.81 +0.1 3,235,473 - Dshi_3066 0.82 +0.3 3,235,489 + Dshi_3066 0.84 -0.4 3,235,855 + Dshi_3067 0.11 -1.2 3,235,863 - Dshi_3067 0.12 -0.1 3,235,930 - Dshi_3067 0.21 +0.0 3,236,036 - Dshi_3067 0.36 -0.1 3,236,065 - Dshi_3067 0.40 +0.1 3,236,134 - Dshi_3067 0.49 -0.8 3,236,238 + Dshi_3067 0.63 +0.5 3,236,526 - +0.7 3,236,645 + -0.1
Or see this region's nucleotide sequence