Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2878

Experiment: m.b. Benzalkonium Chloride 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2877 and Dshi_2878 are separated by 203 nucleotidesDshi_2878 and Dshi_2879 are separated by 129 nucleotidesDshi_2879 and Dshi_2880 overlap by 4 nucleotides Dshi_2877: Dshi_2877 - hypothetical protein (RefSeq), at 3,031,039 to 3,032,007 _2877 Dshi_2878: Dshi_2878 - succinyl-CoA synthetase, beta subunit (RefSeq), at 3,032,211 to 3,033,404 _2878 Dshi_2879: Dshi_2879 - hypothetical protein (RefSeq), at 3,033,534 to 3,034,235 _2879 Dshi_2880: Dshi_2880 - hypothetical protein (RefSeq), at 3,034,232 to 3,034,780 _2880 Position (kb) 3032 3033 3034Strain fitness (log2 ratio) -2 -1 0 1at 3031.258 kb on - strand, within Dshi_2877at 3031.271 kb on + strand, within Dshi_2877at 3031.279 kb on - strand, within Dshi_2877at 3031.319 kb on - strand, within Dshi_2877at 3031.369 kb on + strand, within Dshi_2877at 3031.451 kb on + strand, within Dshi_2877at 3031.488 kb on + strand, within Dshi_2877at 3031.502 kb on - strand, within Dshi_2877at 3031.560 kb on + strand, within Dshi_2877at 3031.560 kb on + strand, within Dshi_2877at 3031.629 kb on - strand, within Dshi_2877at 3031.631 kb on + strand, within Dshi_2877at 3031.673 kb on + strand, within Dshi_2877at 3031.681 kb on - strand, within Dshi_2877at 3031.697 kb on + strand, within Dshi_2877at 3031.717 kb on + strand, within Dshi_2877at 3031.737 kb on + strand, within Dshi_2877at 3031.742 kb on + strand, within Dshi_2877at 3031.810 kb on + strand, within Dshi_2877at 3031.810 kb on + strand, within Dshi_2877at 3031.821 kb on + strand, within Dshi_2877at 3031.821 kb on + strand, within Dshi_2877at 3031.865 kb on - strand, within Dshi_2877at 3031.873 kb on - strand, within Dshi_2877at 3031.891 kb on - strand, within Dshi_2877at 3031.892 kb on + strand, within Dshi_2877at 3031.892 kb on + strand, within Dshi_2877at 3031.902 kb on + strand, within Dshi_2877at 3031.902 kb on + strand, within Dshi_2877at 3031.902 kb on + strand, within Dshi_2877at 3031.902 kb on + strand, within Dshi_2877at 3031.910 kb on - strand, within Dshi_2877at 3031.910 kb on - strand, within Dshi_2877at 3031.910 kb on - strand, within Dshi_2877at 3031.969 kb on - strandat 3031.982 kb on + strandat 3032.056 kb on - strandat 3032.056 kb on - strandat 3032.094 kb on + strandat 3033.871 kb on + strand, within Dshi_2879

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0005 mg/ml
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3,031,258 - Dshi_2877 0.23 -0.4
3,031,271 + Dshi_2877 0.24 -1.8
3,031,279 - Dshi_2877 0.25 -0.5
3,031,319 - Dshi_2877 0.29 +0.4
3,031,369 + Dshi_2877 0.34 -1.0
3,031,451 + Dshi_2877 0.43 +0.5
3,031,488 + Dshi_2877 0.46 +1.3
3,031,502 - Dshi_2877 0.48 +0.4
3,031,560 + Dshi_2877 0.54 -0.4
3,031,560 + Dshi_2877 0.54 -0.5
3,031,629 - Dshi_2877 0.61 +0.4
3,031,631 + Dshi_2877 0.61 +1.2
3,031,673 + Dshi_2877 0.65 -0.9
3,031,681 - Dshi_2877 0.66 -0.0
3,031,697 + Dshi_2877 0.68 +0.3
3,031,717 + Dshi_2877 0.70 -0.1
3,031,737 + Dshi_2877 0.72 +0.1
3,031,742 + Dshi_2877 0.73 -0.0
3,031,810 + Dshi_2877 0.80 +0.3
3,031,810 + Dshi_2877 0.80 -0.2
3,031,821 + Dshi_2877 0.81 +0.2
3,031,821 + Dshi_2877 0.81 -0.2
3,031,865 - Dshi_2877 0.85 -0.8
3,031,873 - Dshi_2877 0.86 -0.2
3,031,891 - Dshi_2877 0.88 -1.3
3,031,892 + Dshi_2877 0.88 -0.6
3,031,892 + Dshi_2877 0.88 +0.3
3,031,902 + Dshi_2877 0.89 +0.1
3,031,902 + Dshi_2877 0.89 +0.1
3,031,902 + Dshi_2877 0.89 +0.3
3,031,902 + Dshi_2877 0.89 +0.4
3,031,910 - Dshi_2877 0.90 +0.2
3,031,910 - Dshi_2877 0.90 +0.2
3,031,910 - Dshi_2877 0.90 +0.5
3,031,969 - -0.3
3,031,982 + -0.1
3,032,056 - +0.4
3,032,056 - +0.0
3,032,094 + +0.2
3,033,871 + Dshi_2879 0.48 +0.6

Or see this region's nucleotide sequence