Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2825

Experiment: m.b. Benzalkonium Chloride 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2824 and Dshi_2825 are separated by 51 nucleotidesDshi_2825 and Dshi_2826 are separated by 46 nucleotidesDshi_2826 and Dshi_2827 are separated by 37 nucleotides Dshi_2824: Dshi_2824 - hypothetical protein (RefSeq), at 2,980,248 to 2,981,147 _2824 Dshi_2825: Dshi_2825 - 3-hydroxyacyl-CoA dehydrogenase NAD-binding (RefSeq), at 2,981,199 to 2,982,374 _2825 Dshi_2826: Dshi_2826 - hypothetical protein (RefSeq), at 2,982,421 to 2,983,074 _2826 Dshi_2827: Dshi_2827 - YceI family protein (RefSeq), at 2,983,112 to 2,983,675 _2827 Position (kb) 2981 2982 2983Strain fitness (log2 ratio) -1 0 1 2at 2980.282 kb on + strandat 2980.342 kb on + strand, within Dshi_2824at 2980.404 kb on + strand, within Dshi_2824at 2980.568 kb on - strand, within Dshi_2824at 2980.604 kb on - strand, within Dshi_2824at 2980.626 kb on + strand, within Dshi_2824at 2980.693 kb on - strand, within Dshi_2824at 2980.714 kb on - strand, within Dshi_2824at 2980.814 kb on - strand, within Dshi_2824at 2980.847 kb on + strand, within Dshi_2824at 2980.855 kb on - strand, within Dshi_2824at 2980.922 kb on - strand, within Dshi_2824at 2980.980 kb on + strand, within Dshi_2824at 2981.099 kb on - strandat 2981.190 kb on + strandat 2981.196 kb on + strandat 2981.251 kb on - strandat 2981.378 kb on + strand, within Dshi_2825at 2981.766 kb on - strand, within Dshi_2825at 2981.770 kb on - strand, within Dshi_2825at 2981.952 kb on + strand, within Dshi_2825at 2982.040 kb on + strand, within Dshi_2825at 2982.040 kb on + strand, within Dshi_2825at 2982.043 kb on - strand, within Dshi_2825at 2982.683 kb on + strand, within Dshi_2826at 2982.737 kb on - strand, within Dshi_2826at 2983.100 kb on - strandat 2983.102 kb on + strandat 2983.110 kb on - strandat 2983.317 kb on + strandat 2983.325 kb on - strand, within Dshi_2827

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0005 mg/ml
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2,980,282 + +1.2
2,980,342 + Dshi_2824 0.10 -0.6
2,980,404 + Dshi_2824 0.17 +0.7
2,980,568 - Dshi_2824 0.36 +1.4
2,980,604 - Dshi_2824 0.40 +0.1
2,980,626 + Dshi_2824 0.42 +0.7
2,980,693 - Dshi_2824 0.49 +0.8
2,980,714 - Dshi_2824 0.52 +0.5
2,980,814 - Dshi_2824 0.63 +0.3
2,980,847 + Dshi_2824 0.67 -0.8
2,980,855 - Dshi_2824 0.67 +1.2
2,980,922 - Dshi_2824 0.75 -0.5
2,980,980 + Dshi_2824 0.81 -0.4
2,981,099 - -0.3
2,981,190 + +0.1
2,981,196 + -0.7
2,981,251 - +0.1
2,981,378 + Dshi_2825 0.15 +0.4
2,981,766 - Dshi_2825 0.48 +0.0
2,981,770 - Dshi_2825 0.49 -0.4
2,981,952 + Dshi_2825 0.64 +0.3
2,982,040 + Dshi_2825 0.72 +0.2
2,982,040 + Dshi_2825 0.72 -0.2
2,982,043 - Dshi_2825 0.72 +0.7
2,982,683 + Dshi_2826 0.40 +0.6
2,982,737 - Dshi_2826 0.48 -1.4
2,983,100 - -0.0
2,983,102 + -0.2
2,983,110 - +0.8
2,983,317 + +2.0
2,983,325 - Dshi_2827 0.38 +1.3

Or see this region's nucleotide sequence