Experiment: m.b. Benzalkonium Chloride 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2235 and Dshi_2236 are separated by 54 nucleotides Dshi_2236 and Dshi_2237 are separated by 55 nucleotides
Dshi_2235: Dshi_2235 - Methionine synthase vitamin-B12 independent (RefSeq), at 2,358,775 to 2,359,911
_2235
Dshi_2236: Dshi_2236 - hypothetical protein (RefSeq), at 2,359,966 to 2,360,964
_2236
Dshi_2237: Dshi_2237 - protein of unknown function DUF1486 (RefSeq), at 2,361,020 to 2,362,003
_2237
Position (kb)
2359
2360
2361 Strain fitness (log2 ratio)
-1
0
1 at 2359.071 kb on + strand, within Dshi_2235 at 2359.106 kb on + strand, within Dshi_2235 at 2359.120 kb on + strand, within Dshi_2235 at 2359.127 kb on + strand, within Dshi_2235 at 2359.210 kb on - strand, within Dshi_2235 at 2359.220 kb on - strand, within Dshi_2235 at 2359.225 kb on + strand, within Dshi_2235 at 2359.233 kb on - strand, within Dshi_2235 at 2359.233 kb on - strand, within Dshi_2235 at 2359.247 kb on - strand, within Dshi_2235 at 2359.446 kb on + strand, within Dshi_2235 at 2359.573 kb on - strand, within Dshi_2235 at 2359.609 kb on - strand, within Dshi_2235 at 2359.751 kb on + strand, within Dshi_2235 at 2359.751 kb on + strand, within Dshi_2235 at 2359.797 kb on - strand, within Dshi_2235 at 2359.829 kb on - strand at 2359.837 kb on - strand at 2359.860 kb on + strand at 2359.860 kb on + strand at 2359.860 kb on + strand at 2359.879 kb on + strand at 2359.912 kb on - strand at 2359.920 kb on + strand at 2359.936 kb on - strand at 2359.964 kb on + strand at 2359.978 kb on + strand at 2360.040 kb on - strand at 2360.105 kb on - strand, within Dshi_2236 at 2360.224 kb on + strand, within Dshi_2236 at 2360.232 kb on - strand, within Dshi_2236 at 2360.306 kb on - strand, within Dshi_2236 at 2360.314 kb on + strand, within Dshi_2236 at 2360.314 kb on + strand, within Dshi_2236 at 2360.314 kb on + strand, within Dshi_2236 at 2360.322 kb on - strand, within Dshi_2236 at 2360.380 kb on + strand, within Dshi_2236 at 2360.387 kb on + strand, within Dshi_2236 at 2360.387 kb on + strand, within Dshi_2236 at 2360.395 kb on - strand, within Dshi_2236 at 2360.395 kb on - strand, within Dshi_2236 at 2360.448 kb on - strand, within Dshi_2236 at 2360.576 kb on - strand, within Dshi_2236 at 2360.679 kb on - strand, within Dshi_2236 at 2360.714 kb on + strand, within Dshi_2236 at 2360.739 kb on - strand, within Dshi_2236 at 2360.808 kb on + strand, within Dshi_2236 at 2360.834 kb on - strand, within Dshi_2236 at 2360.843 kb on - strand, within Dshi_2236 at 2360.882 kb on - strand at 2360.888 kb on + strand at 2360.891 kb on - strand at 2361.068 kb on + strand at 2361.217 kb on - strand, within Dshi_2237 at 2361.217 kb on - strand, within Dshi_2237 at 2361.382 kb on - strand, within Dshi_2237 at 2361.408 kb on + strand, within Dshi_2237 at 2361.427 kb on + strand, within Dshi_2237 at 2361.427 kb on + strand, within Dshi_2237 at 2361.435 kb on - strand, within Dshi_2237 at 2361.477 kb on + strand, within Dshi_2237 at 2361.478 kb on + strand, within Dshi_2237 at 2361.479 kb on - strand, within Dshi_2237 at 2361.485 kb on - strand, within Dshi_2237 at 2361.486 kb on - strand, within Dshi_2237 at 2361.498 kb on + strand, within Dshi_2237 at 2361.500 kb on + strand, within Dshi_2237 at 2361.667 kb on - strand, within Dshi_2237 at 2361.677 kb on - strand, within Dshi_2237 at 2361.776 kb on + strand, within Dshi_2237 at 2361.784 kb on - strand, within Dshi_2237 at 2361.814 kb on + strand, within Dshi_2237 at 2361.828 kb on - strand, within Dshi_2237 at 2361.931 kb on - strand at 2361.941 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0005 mg/ml remove 2,359,071 + Dshi_2235 0.26 -1.1 2,359,106 + Dshi_2235 0.29 +0.6 2,359,120 + Dshi_2235 0.30 -0.4 2,359,127 + Dshi_2235 0.31 -0.2 2,359,210 - Dshi_2235 0.38 +0.0 2,359,220 - Dshi_2235 0.39 +0.3 2,359,225 + Dshi_2235 0.40 +0.2 2,359,233 - Dshi_2235 0.40 -0.9 2,359,233 - Dshi_2235 0.40 +0.6 2,359,247 - Dshi_2235 0.42 -0.1 2,359,446 + Dshi_2235 0.59 +0.0 2,359,573 - Dshi_2235 0.70 -0.7 2,359,609 - Dshi_2235 0.73 +0.3 2,359,751 + Dshi_2235 0.86 +0.2 2,359,751 + Dshi_2235 0.86 +0.1 2,359,797 - Dshi_2235 0.90 -0.2 2,359,829 - +0.9 2,359,837 - +1.1 2,359,860 + -0.5 2,359,860 + +0.3 2,359,860 + +1.1 2,359,879 + -0.1 2,359,912 - -1.1 2,359,920 + -0.1 2,359,936 - +0.5 2,359,964 + -0.7 2,359,978 + -0.1 2,360,040 - +0.4 2,360,105 - Dshi_2236 0.14 -0.5 2,360,224 + Dshi_2236 0.26 -0.1 2,360,232 - Dshi_2236 0.27 -0.1 2,360,306 - Dshi_2236 0.34 +0.4 2,360,314 + Dshi_2236 0.35 -0.3 2,360,314 + Dshi_2236 0.35 +0.9 2,360,314 + Dshi_2236 0.35 -0.3 2,360,322 - Dshi_2236 0.36 +0.1 2,360,380 + Dshi_2236 0.41 -0.6 2,360,387 + Dshi_2236 0.42 +1.2 2,360,387 + Dshi_2236 0.42 -0.3 2,360,395 - Dshi_2236 0.43 -0.1 2,360,395 - Dshi_2236 0.43 +1.3 2,360,448 - Dshi_2236 0.48 +0.2 2,360,576 - Dshi_2236 0.61 -0.4 2,360,679 - Dshi_2236 0.71 -1.4 2,360,714 + Dshi_2236 0.75 +0.9 2,360,739 - Dshi_2236 0.77 -0.5 2,360,808 + Dshi_2236 0.84 +0.2 2,360,834 - Dshi_2236 0.87 +0.7 2,360,843 - Dshi_2236 0.88 -0.3 2,360,882 - +0.3 2,360,888 + +0.5 2,360,891 - +0.5 2,361,068 + -0.2 2,361,217 - Dshi_2237 0.20 -0.2 2,361,217 - Dshi_2237 0.20 -0.8 2,361,382 - Dshi_2237 0.37 +0.3 2,361,408 + Dshi_2237 0.39 -0.1 2,361,427 + Dshi_2237 0.41 -0.7 2,361,427 + Dshi_2237 0.41 -0.5 2,361,435 - Dshi_2237 0.42 +0.2 2,361,477 + Dshi_2237 0.46 -0.3 2,361,478 + Dshi_2237 0.47 +0.4 2,361,479 - Dshi_2237 0.47 -0.2 2,361,485 - Dshi_2237 0.47 +0.5 2,361,486 - Dshi_2237 0.47 +0.2 2,361,498 + Dshi_2237 0.49 -0.8 2,361,500 + Dshi_2237 0.49 -0.0 2,361,667 - Dshi_2237 0.66 -0.2 2,361,677 - Dshi_2237 0.67 +0.3 2,361,776 + Dshi_2237 0.77 +1.3 2,361,784 - Dshi_2237 0.78 +0.2 2,361,814 + Dshi_2237 0.81 +0.0 2,361,828 - Dshi_2237 0.82 +0.5 2,361,931 - -0.2 2,361,941 - -1.3
Or see this region's nucleotide sequence