Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2061

Experiment: m.b. Benzalkonium Chloride 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2060 and Dshi_2061 are separated by 310 nucleotidesDshi_2061 and Dshi_2062 are separated by 159 nucleotides Dshi_2060: Dshi_2060 - Aconitate hydratase (EC 4.2.1.3) (from data), at 2,178,310 to 2,181,102 _2060 Dshi_2061: Dshi_2061 - aspartate kinase (RefSeq), at 2,181,413 to 2,182,651 _2061 Dshi_2062: Dshi_2062 - PTSINtr with GAF domain, PtsP (RefSeq), at 2,182,811 to 2,185,054 _2062 Position (kb) 2181 2182 2183Strain fitness (log2 ratio) -1 0 1at 2180.468 kb on + strand, within Dshi_2060at 2180.594 kb on - strand, within Dshi_2060at 2180.706 kb on + strand, within Dshi_2060at 2180.731 kb on - strand, within Dshi_2060at 2180.813 kb on + strand, within Dshi_2060at 2180.821 kb on + strand, within Dshi_2060at 2180.841 kb on - strandat 2180.868 kb on + strandat 2180.876 kb on - strandat 2180.878 kb on + strandat 2180.886 kb on - strandat 2181.099 kb on - strandat 2181.147 kb on - strandat 2181.158 kb on + strandat 2181.178 kb on + strandat 2181.246 kb on - strandat 2181.269 kb on + strandat 2181.277 kb on - strandat 2182.704 kb on - strandat 2182.977 kb on + strandat 2182.977 kb on + strandat 2182.985 kb on - strandat 2183.000 kb on - strandat 2183.015 kb on - strandat 2183.026 kb on - strandat 2183.264 kb on - strand, within Dshi_2062at 2183.546 kb on - strand, within Dshi_2062

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0005 mg/ml
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2,180,468 + Dshi_2060 0.77 +0.0
2,180,594 - Dshi_2060 0.82 +0.8
2,180,706 + Dshi_2060 0.86 -0.8
2,180,731 - Dshi_2060 0.87 +0.4
2,180,813 + Dshi_2060 0.90 +0.3
2,180,821 + Dshi_2060 0.90 -0.7
2,180,841 - +0.2
2,180,868 + -1.6
2,180,876 - -0.8
2,180,878 + -1.3
2,180,886 - -1.1
2,181,099 - +1.2
2,181,147 - +0.1
2,181,158 + +0.1
2,181,178 + -0.2
2,181,246 - -0.3
2,181,269 + +0.0
2,181,277 - -0.8
2,182,704 - +0.1
2,182,977 + -0.1
2,182,977 + -0.8
2,182,985 - +0.1
2,183,000 - +0.3
2,183,015 - -0.9
2,183,026 - +0.1
2,183,264 - Dshi_2062 0.20 -0.2
2,183,546 - Dshi_2062 0.33 -0.6

Or see this region's nucleotide sequence