Experiment: m.b. Benzalkonium Chloride 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2014 and Dshi_2015 are separated by 92 nucleotides Dshi_2015 and Dshi_2016 overlap by 1 nucleotides Dshi_2016 and Dshi_2017 are separated by 0 nucleotides
Dshi_2014: Dshi_2014 - extracellular solute-binding protein family 1 (RefSeq), at 2,133,086 to 2,134,387
_2014
Dshi_2015: Dshi_2015 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,134,480 to 2,135,361
_2015
Dshi_2016: Dshi_2016 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,135,361 to 2,136,215
_2016
Dshi_2017: Dshi_2017 - ABC transporter related (RefSeq), at 2,136,216 to 2,137,217
_2017
Position (kb)
2135
2136
2137 Strain fitness (log2 ratio)
-1
0
1 at 2134.604 kb on + strand, within Dshi_2015 at 2134.612 kb on - strand, within Dshi_2015 at 2134.759 kb on - strand, within Dshi_2015 at 2134.776 kb on + strand, within Dshi_2015 at 2134.847 kb on - strand, within Dshi_2015 at 2134.965 kb on + strand, within Dshi_2015 at 2135.078 kb on - strand, within Dshi_2015 at 2135.165 kb on + strand, within Dshi_2015 at 2135.232 kb on + strand, within Dshi_2015 at 2135.237 kb on + strand, within Dshi_2015 at 2135.304 kb on + strand at 2135.357 kb on + strand at 2135.376 kb on + strand at 2135.395 kb on + strand at 2135.401 kb on + strand at 2135.421 kb on + strand at 2135.590 kb on + strand, within Dshi_2016 at 2135.764 kb on + strand, within Dshi_2016 at 2135.808 kb on + strand, within Dshi_2016 at 2135.808 kb on + strand, within Dshi_2016 at 2135.927 kb on + strand, within Dshi_2016 at 2136.048 kb on - strand, within Dshi_2016 at 2136.080 kb on + strand, within Dshi_2016 at 2136.090 kb on + strand, within Dshi_2016 at 2136.108 kb on - strand, within Dshi_2016 at 2136.267 kb on - strand at 2136.277 kb on - strand at 2136.283 kb on + strand at 2136.606 kb on + strand, within Dshi_2017 at 2136.633 kb on - strand, within Dshi_2017 at 2136.650 kb on - strand, within Dshi_2017 at 2137.052 kb on + strand, within Dshi_2017
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0005 mg/ml remove 2,134,604 + Dshi_2015 0.14 +0.6 2,134,612 - Dshi_2015 0.15 -0.1 2,134,759 - Dshi_2015 0.32 +0.5 2,134,776 + Dshi_2015 0.34 +0.5 2,134,847 - Dshi_2015 0.42 +0.4 2,134,965 + Dshi_2015 0.55 +0.8 2,135,078 - Dshi_2015 0.68 -0.3 2,135,165 + Dshi_2015 0.78 +0.9 2,135,232 + Dshi_2015 0.85 -0.7 2,135,237 + Dshi_2015 0.86 +1.0 2,135,304 + -0.1 2,135,357 + +0.4 2,135,376 + -0.2 2,135,395 + +0.5 2,135,401 + +0.2 2,135,421 + +0.6 2,135,590 + Dshi_2016 0.27 +0.2 2,135,764 + Dshi_2016 0.47 +0.2 2,135,808 + Dshi_2016 0.52 +1.2 2,135,808 + Dshi_2016 0.52 +0.6 2,135,927 + Dshi_2016 0.66 -0.1 2,136,048 - Dshi_2016 0.80 +0.7 2,136,080 + Dshi_2016 0.84 +1.1 2,136,090 + Dshi_2016 0.85 -0.4 2,136,108 - Dshi_2016 0.87 +0.5 2,136,267 - +0.2 2,136,277 - -1.7 2,136,283 + +0.1 2,136,606 + Dshi_2017 0.39 +0.2 2,136,633 - Dshi_2017 0.42 +0.5 2,136,650 - Dshi_2017 0.43 +0.5 2,137,052 + Dshi_2017 0.83 +0.4
Or see this region's nucleotide sequence