Experiment: m.b. Benzalkonium Chloride 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1751 and Dshi_1752 overlap by 4 nucleotides Dshi_1752 and Dshi_1753 are separated by 61 nucleotides Dshi_1753 and Dshi_1754 are separated by 90 nucleotides Dshi_1754 and Dshi_1755 overlap by 8 nucleotides Dshi_1755 and Dshi_1756 overlap by 11 nucleotides
Dshi_1751: Dshi_1751 - Enoyl-CoA hydratase/isomerase (RefSeq), at 1,817,193 to 1,818,239
_1751
Dshi_1752: Dshi_1752 - 3-hydroxyisobutyrate dehydrogenase (RefSeq), at 1,818,236 to 1,819,111
_1752
Dshi_1753: Dshi_1753 - Enoyl-CoA hydratase/isomerase (RefSeq), at 1,819,173 to 1,819,949
_1753
Dshi_1754: Dshi_1754 - hypothetical protein (RefSeq), at 1,820,040 to 1,820,456
_1754
Dshi_1755: Dshi_1755 - hypothetical protein (RefSeq), at 1,820,449 to 1,820,655
_1755
Dshi_1756: Dshi_1756 - hypothetical protein (RefSeq), at 1,820,645 to 1,821,166
_1756
Position (kb)
1819
1820 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1818.609 kb on + strand, within Dshi_1752 at 1818.778 kb on - strand, within Dshi_1752 at 1818.839 kb on + strand, within Dshi_1752 at 1818.847 kb on - strand, within Dshi_1752 at 1818.910 kb on - strand, within Dshi_1752 at 1819.029 kb on + strand at 1819.142 kb on + strand at 1819.252 kb on - strand, within Dshi_1753 at 1819.419 kb on - strand, within Dshi_1753 at 1819.439 kb on - strand, within Dshi_1753 at 1819.456 kb on - strand, within Dshi_1753 at 1819.500 kb on - strand, within Dshi_1753 at 1819.615 kb on - strand, within Dshi_1753 at 1819.656 kb on + strand, within Dshi_1753 at 1819.766 kb on - strand, within Dshi_1753 at 1819.811 kb on - strand, within Dshi_1753 at 1819.936 kb on - strand at 1819.945 kb on + strand at 1819.953 kb on - strand at 1820.011 kb on - strand at 1820.188 kb on + strand, within Dshi_1754 at 1820.196 kb on - strand, within Dshi_1754 at 1820.202 kb on - strand, within Dshi_1754 at 1820.238 kb on - strand, within Dshi_1754 at 1820.366 kb on - strand, within Dshi_1754 at 1820.412 kb on + strand, within Dshi_1754 at 1820.420 kb on - strand at 1820.482 kb on + strand, within Dshi_1755 at 1820.515 kb on + strand, within Dshi_1755 at 1820.549 kb on - strand, within Dshi_1755 at 1820.892 kb on - strand, within Dshi_1756 at 1820.903 kb on + strand, within Dshi_1756
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0005 mg/ml remove 1,818,609 + Dshi_1752 0.43 +0.6 1,818,778 - Dshi_1752 0.62 +0.1 1,818,839 + Dshi_1752 0.69 -0.6 1,818,847 - Dshi_1752 0.70 +0.8 1,818,910 - Dshi_1752 0.77 -1.2 1,819,029 + -0.1 1,819,142 + -0.2 1,819,252 - Dshi_1753 0.10 -2.9 1,819,419 - Dshi_1753 0.32 -2.3 1,819,439 - Dshi_1753 0.34 -2.6 1,819,456 - Dshi_1753 0.36 -5.2 1,819,500 - Dshi_1753 0.42 -3.2 1,819,615 - Dshi_1753 0.57 -2.2 1,819,656 + Dshi_1753 0.62 -4.0 1,819,766 - Dshi_1753 0.76 -4.6 1,819,811 - Dshi_1753 0.82 -2.5 1,819,936 - -2.3 1,819,945 + -1.5 1,819,953 - -2.8 1,820,011 - +0.5 1,820,188 + Dshi_1754 0.35 +0.2 1,820,196 - Dshi_1754 0.37 -0.3 1,820,202 - Dshi_1754 0.39 -0.0 1,820,238 - Dshi_1754 0.47 +0.2 1,820,366 - Dshi_1754 0.78 +0.4 1,820,412 + Dshi_1754 0.89 -0.2 1,820,420 - +1.6 1,820,482 + Dshi_1755 0.16 -0.2 1,820,515 + Dshi_1755 0.32 -0.3 1,820,549 - Dshi_1755 0.48 -0.5 1,820,892 - Dshi_1756 0.47 +0.2 1,820,903 + Dshi_1756 0.49 +0.4
Or see this region's nucleotide sequence