Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1700

Experiment: m.b. Benzalkonium Chloride 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1699 and Dshi_1700 are separated by 305 nucleotidesDshi_1700 and Dshi_1701 are separated by 10 nucleotidesDshi_1701 and Dshi_1702 overlap by 4 nucleotides Dshi_1699: Dshi_1699 - hypothetical protein (RefSeq), at 1,768,734 to 1,769,330 _1699 Dshi_1700: Dshi_1700 - short-chain dehydrogenase/reductase SDR (RefSeq), at 1,769,636 to 1,770,391 _1700 Dshi_1701: Dshi_1701 - ABC-3 protein (RefSeq), at 1,770,402 to 1,771,202 _1701 Dshi_1702: Dshi_1702 - ABC transporter related (RefSeq), at 1,771,199 to 1,771,942 _1702 Position (kb) 1769 1770 1771Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1768.652 kb on - strandat 1768.732 kb on + strandat 1768.849 kb on - strand, within Dshi_1699at 1768.949 kb on - strand, within Dshi_1699at 1769.172 kb on - strand, within Dshi_1699at 1769.243 kb on + strand, within Dshi_1699at 1769.243 kb on + strand, within Dshi_1699at 1769.251 kb on - strand, within Dshi_1699at 1769.351 kb on - strandat 1769.351 kb on - strandat 1769.365 kb on + strandat 1769.429 kb on - strandat 1769.521 kb on - strandat 1769.533 kb on - strandat 1769.533 kb on - strandat 1769.533 kb on - strandat 1769.533 kb on - strandat 1769.540 kb on + strandat 1769.545 kb on + strandat 1769.863 kb on - strand, within Dshi_1700at 1769.863 kb on - strand, within Dshi_1700at 1769.911 kb on + strand, within Dshi_1700at 1770.142 kb on + strand, within Dshi_1700at 1770.142 kb on + strand, within Dshi_1700at 1770.142 kb on + strand, within Dshi_1700at 1770.386 kb on + strandat 1770.411 kb on - strandat 1770.523 kb on + strand, within Dshi_1701at 1770.625 kb on + strand, within Dshi_1701at 1770.664 kb on - strand, within Dshi_1701at 1770.813 kb on - strand, within Dshi_1701at 1770.816 kb on + strand, within Dshi_1701at 1770.915 kb on + strand, within Dshi_1701at 1771.164 kb on + strandat 1771.265 kb on - strandat 1771.298 kb on - strand, within Dshi_1702at 1771.330 kb on - strand, within Dshi_1702

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0005 mg/ml
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1,768,652 - +0.6
1,768,732 + +0.3
1,768,849 - Dshi_1699 0.19 +0.3
1,768,949 - Dshi_1699 0.36 -0.1
1,769,172 - Dshi_1699 0.73 +0.3
1,769,243 + Dshi_1699 0.85 -0.2
1,769,243 + Dshi_1699 0.85 -0.1
1,769,251 - Dshi_1699 0.87 -0.3
1,769,351 - +0.2
1,769,351 - +0.1
1,769,365 + +0.1
1,769,429 - +0.1
1,769,521 - -0.8
1,769,533 - -0.6
1,769,533 - +0.1
1,769,533 - +1.8
1,769,533 - -0.2
1,769,540 + -0.8
1,769,545 + -0.2
1,769,863 - Dshi_1700 0.30 -0.4
1,769,863 - Dshi_1700 0.30 +0.3
1,769,911 + Dshi_1700 0.36 +0.3
1,770,142 + Dshi_1700 0.67 +0.8
1,770,142 + Dshi_1700 0.67 -0.4
1,770,142 + Dshi_1700 0.67 +1.6
1,770,386 + +0.5
1,770,411 - +0.6
1,770,523 + Dshi_1701 0.15 +0.7
1,770,625 + Dshi_1701 0.28 -3.2
1,770,664 - Dshi_1701 0.33 -0.4
1,770,813 - Dshi_1701 0.51 +0.4
1,770,816 + Dshi_1701 0.52 -0.4
1,770,915 + Dshi_1701 0.64 -0.7
1,771,164 + +0.8
1,771,265 - +0.0
1,771,298 - Dshi_1702 0.13 -0.0
1,771,330 - Dshi_1702 0.18 +0.0

Or see this region's nucleotide sequence