Experiment: m.b. Benzalkonium Chloride 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1602 and Dshi_1603 are separated by 225 nucleotides Dshi_1603 and Dshi_1604 are separated by 56 nucleotides Dshi_1604 and Dshi_1605 are separated by 6 nucleotides Dshi_1605 and Dshi_1606 are separated by 160 nucleotides
Dshi_1602: Dshi_1602 - ribosomal protein L13 (RefSeq), at 1,666,677 to 1,667,135
_1602
Dshi_1603: Dshi_1603 - thioesterase superfamily protein (RefSeq), at 1,667,361 to 1,667,783
_1603
Dshi_1604: Dshi_1604 - Enoyl-CoA hydratase/isomerase (RefSeq), at 1,667,840 to 1,668,634
_1604
Dshi_1605: Dshi_1605 - Lytic transglycosylase catalytic (RefSeq), at 1,668,641 to 1,669,249
_1605
Dshi_1606: Dshi_1606 - single-strand binding protein (RefSeq), at 1,669,410 to 1,669,916
_1606
Position (kb)
1667
1668
1669 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1667.393 kb on - strand at 1667.408 kb on - strand, within Dshi_1603 at 1667.410 kb on + strand, within Dshi_1603 at 1667.455 kb on - strand, within Dshi_1603 at 1667.455 kb on - strand, within Dshi_1603 at 1667.455 kb on - strand, within Dshi_1603 at 1667.455 kb on - strand, within Dshi_1603 at 1667.560 kb on + strand, within Dshi_1603 at 1667.568 kb on - strand, within Dshi_1603 at 1667.687 kb on - strand, within Dshi_1603 at 1667.733 kb on + strand, within Dshi_1603 at 1667.806 kb on + strand at 1667.851 kb on - strand at 1667.893 kb on - strand at 1667.894 kb on - strand at 1667.908 kb on - strand at 1667.918 kb on - strand at 1667.958 kb on + strand, within Dshi_1604 at 1668.046 kb on + strand, within Dshi_1604 at 1668.046 kb on + strand, within Dshi_1604 at 1668.053 kb on + strand, within Dshi_1604 at 1668.106 kb on - strand, within Dshi_1604 at 1668.137 kb on + strand, within Dshi_1604 at 1668.332 kb on - strand, within Dshi_1604 at 1668.388 kb on - strand, within Dshi_1604 at 1668.393 kb on + strand, within Dshi_1604 at 1668.413 kb on - strand, within Dshi_1604 at 1668.457 kb on + strand, within Dshi_1604 at 1668.457 kb on + strand, within Dshi_1604 at 1668.639 kb on + strand at 1668.743 kb on - strand, within Dshi_1605 at 1668.900 kb on + strand, within Dshi_1605 at 1668.900 kb on + strand, within Dshi_1605 at 1668.908 kb on - strand, within Dshi_1605 at 1668.922 kb on + strand, within Dshi_1605 at 1668.996 kb on - strand, within Dshi_1605 at 1669.000 kb on + strand, within Dshi_1605 at 1669.105 kb on + strand, within Dshi_1605 at 1669.113 kb on - strand, within Dshi_1605 at 1669.192 kb on - strand at 1669.258 kb on + strand at 1669.266 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0005 mg/ml remove 1,667,393 - -0.1 1,667,408 - Dshi_1603 0.11 -0.5 1,667,410 + Dshi_1603 0.12 -0.0 1,667,455 - Dshi_1603 0.22 -0.8 1,667,455 - Dshi_1603 0.22 +0.5 1,667,455 - Dshi_1603 0.22 -0.3 1,667,455 - Dshi_1603 0.22 +0.1 1,667,560 + Dshi_1603 0.47 -0.2 1,667,568 - Dshi_1603 0.49 -0.8 1,667,687 - Dshi_1603 0.77 +0.5 1,667,733 + Dshi_1603 0.88 -0.3 1,667,806 + +0.1 1,667,851 - -1.7 1,667,893 - -1.1 1,667,894 - +2.2 1,667,908 - -0.4 1,667,918 - -0.9 1,667,958 + Dshi_1604 0.15 -0.3 1,668,046 + Dshi_1604 0.26 +1.0 1,668,046 + Dshi_1604 0.26 -0.1 1,668,053 + Dshi_1604 0.27 +0.1 1,668,106 - Dshi_1604 0.33 +0.3 1,668,137 + Dshi_1604 0.37 +0.1 1,668,332 - Dshi_1604 0.62 -0.3 1,668,388 - Dshi_1604 0.69 -0.4 1,668,393 + Dshi_1604 0.70 +0.2 1,668,413 - Dshi_1604 0.72 -0.3 1,668,457 + Dshi_1604 0.78 +0.4 1,668,457 + Dshi_1604 0.78 -0.5 1,668,639 + -0.5 1,668,743 - Dshi_1605 0.17 -1.4 1,668,900 + Dshi_1605 0.43 -2.8 1,668,900 + Dshi_1605 0.43 -3.2 1,668,908 - Dshi_1605 0.44 -1.5 1,668,922 + Dshi_1605 0.46 -0.4 1,668,996 - Dshi_1605 0.58 -1.8 1,669,000 + Dshi_1605 0.59 -2.0 1,669,105 + Dshi_1605 0.76 -1.1 1,669,113 - Dshi_1605 0.78 -1.8 1,669,192 - -2.4 1,669,258 + -1.3 1,669,266 - -2.0
Or see this region's nucleotide sequence