Experiment: m.b. Benzalkonium Chloride 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0367 and Dshi_0368 overlap by 4 nucleotides Dshi_0368 and Dshi_0369 are separated by 17 nucleotides Dshi_0369 and Dshi_0370 overlap by 1 nucleotides Dshi_0370 and Dshi_0371 are separated by 18 nucleotides
Dshi_0367: Dshi_0367 - amine oxidase (RefSeq), at 350,649 to 351,953
_0367
Dshi_0368: Dshi_0368 - protein of unknown function DUF1365 (RefSeq), at 351,950 to 352,708
_0368
Dshi_0369: Dshi_0369 - sodium:galactoside symporter family protein, putative (RefSeq), at 352,726 to 353,964
_0369
Dshi_0370: Dshi_0370 - hypothetical protein (RefSeq), at 353,964 to 354,554
_0370
Dshi_0371: Dshi_0371 - short-chain dehydrogenase/reductase SDR (RefSeq), at 354,573 to 355,304
_0371
Position (kb) 352
353
354 Strain fitness (log2 ratio) -1
0
1
2 at 351.768 kb on + strand, within Dshi_0367 at 351.876 kb on + strand at 351.884 kb on - strand at 351.894 kb on - strand at 351.992 kb on + strand at 352.139 kb on + strand, within Dshi_0368 at 352.263 kb on + strand, within Dshi_0368 at 352.271 kb on - strand, within Dshi_0368 at 352.400 kb on - strand, within Dshi_0368 at 352.454 kb on - strand, within Dshi_0368 at 352.454 kb on - strand, within Dshi_0368 at 352.509 kb on - strand, within Dshi_0368 at 352.570 kb on + strand, within Dshi_0368 at 352.653 kb on - strand at 352.674 kb on + strand at 352.706 kb on - strand at 352.833 kb on + strand at 352.833 kb on + strand at 352.835 kb on + strand at 352.849 kb on - strand at 353.049 kb on - strand, within Dshi_0369 at 353.050 kb on - strand, within Dshi_0369 at 353.054 kb on - strand, within Dshi_0369 at 353.137 kb on - strand, within Dshi_0369 at 353.233 kb on + strand, within Dshi_0369 at 353.280 kb on + strand, within Dshi_0369 at 353.301 kb on + strand, within Dshi_0369 at 353.336 kb on - strand, within Dshi_0369 at 353.402 kb on - strand, within Dshi_0369 at 353.407 kb on - strand, within Dshi_0369 at 353.523 kb on + strand, within Dshi_0369 at 353.524 kb on + strand, within Dshi_0369 at 353.532 kb on - strand, within Dshi_0369 at 353.611 kb on + strand, within Dshi_0369 at 353.683 kb on + strand, within Dshi_0369 at 353.785 kb on - strand, within Dshi_0369 at 353.825 kb on - strand, within Dshi_0369 at 353.825 kb on - strand, within Dshi_0369 at 353.842 kb on + strand at 353.855 kb on + strand at 353.872 kb on + strand at 353.893 kb on + strand at 353.937 kb on - strand at 354.022 kb on - strand at 354.064 kb on - strand, within Dshi_0370 at 354.135 kb on + strand, within Dshi_0370 at 354.154 kb on + strand, within Dshi_0370 at 354.290 kb on + strand, within Dshi_0370 at 354.383 kb on + strand, within Dshi_0370 at 354.424 kb on + strand, within Dshi_0370 at 354.426 kb on - strand, within Dshi_0370 at 354.489 kb on + strand, within Dshi_0370 at 354.502 kb on - strand at 354.517 kb on - strand at 354.571 kb on - strand at 354.618 kb on - strand at 354.645 kb on + strand at 354.694 kb on - strand, within Dshi_0371 at 354.711 kb on + strand, within Dshi_0371 at 354.731 kb on + strand, within Dshi_0371 at 354.769 kb on + strand, within Dshi_0371 at 354.803 kb on - strand, within Dshi_0371 at 354.926 kb on + strand, within Dshi_0371 at 354.940 kb on - strand, within Dshi_0371
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0005 mg/ml remove 351,768 + Dshi_0367 0.86 +0.1 351,876 + +0.8 351,884 - -0.3 351,894 - +0.2 351,992 + +0.6 352,139 + Dshi_0368 0.25 -0.0 352,263 + Dshi_0368 0.41 +0.2 352,271 - Dshi_0368 0.42 +2.0 352,400 - Dshi_0368 0.59 +0.9 352,454 - Dshi_0368 0.66 +1.2 352,454 - Dshi_0368 0.66 +0.5 352,509 - Dshi_0368 0.74 +2.2 352,570 + Dshi_0368 0.82 +0.5 352,653 - +0.5 352,674 + -0.0 352,706 - +1.0 352,833 + -0.1 352,833 + +0.4 352,835 + -0.4 352,849 - -0.3 353,049 - Dshi_0369 0.26 +0.2 353,050 - Dshi_0369 0.26 -0.1 353,054 - Dshi_0369 0.26 -0.4 353,137 - Dshi_0369 0.33 -1.3 353,233 + Dshi_0369 0.41 -0.4 353,280 + Dshi_0369 0.45 +0.3 353,301 + Dshi_0369 0.46 +0.8 353,336 - Dshi_0369 0.49 -0.5 353,402 - Dshi_0369 0.55 +1.0 353,407 - Dshi_0369 0.55 +0.2 353,523 + Dshi_0369 0.64 -1.2 353,524 + Dshi_0369 0.64 -0.2 353,532 - Dshi_0369 0.65 -0.3 353,611 + Dshi_0369 0.71 -0.1 353,683 + Dshi_0369 0.77 -0.0 353,785 - Dshi_0369 0.85 -0.1 353,825 - Dshi_0369 0.89 -0.3 353,825 - Dshi_0369 0.89 -0.2 353,842 + +0.1 353,855 + -1.2 353,872 + +0.2 353,893 + -0.5 353,937 - -1.2 354,022 - +1.0 354,064 - Dshi_0370 0.17 -0.4 354,135 + Dshi_0370 0.29 -0.5 354,154 + Dshi_0370 0.32 -0.4 354,290 + Dshi_0370 0.55 +0.1 354,383 + Dshi_0370 0.71 +0.1 354,424 + Dshi_0370 0.78 +1.6 354,426 - Dshi_0370 0.78 -0.0 354,489 + Dshi_0370 0.89 -0.6 354,502 - +0.6 354,517 - -0.1 354,571 - +1.3 354,618 - -0.3 354,645 + +0.6 354,694 - Dshi_0371 0.17 -0.2 354,711 + Dshi_0371 0.19 -0.2 354,731 + Dshi_0371 0.22 -0.6 354,769 + Dshi_0371 0.27 -0.2 354,803 - Dshi_0371 0.31 -0.6 354,926 + Dshi_0371 0.48 -0.5 354,940 - Dshi_0371 0.50 +1.7
Or see this region's nucleotide sequence