Experiment: m.b. Benzalkonium Chloride 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0165 and Dshi_0166 overlap by 4 nucleotides Dshi_0166 and Dshi_0167 overlap by 4 nucleotides Dshi_0167 and Dshi_0168 are separated by 278 nucleotides Dshi_0168 and Dshi_0169 are separated by 101 nucleotides
Dshi_0165: Dshi_0165 - cobalamin biosynthesis protein CobD (RefSeq), at 169,365 to 170,276
_0165
Dshi_0166: Dshi_0166 - aminotransferase class I and II (RefSeq), at 170,273 to 171,229
_0166
Dshi_0167: Dshi_0167 - protein of unknown function DUF1636 (RefSeq), at 171,226 to 171,609
_0167
Dshi_0168: Dshi_0168 - response regulator receiver protein (RefSeq), at 171,888 to 172,247
_0168
Dshi_0169: Dshi_0169 - putative glutathione S-transferase (RefSeq), at 172,349 to 173,338
_0169
Position (kb)
171
172 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 171.406 kb on - strand, within Dshi_0167 at 171.446 kb on + strand, within Dshi_0167 at 171.506 kb on + strand, within Dshi_0167 at 171.618 kb on + strand at 171.618 kb on + strand at 171.625 kb on + strand at 171.625 kb on + strand at 171.628 kb on - strand at 171.641 kb on - strand at 171.651 kb on - strand at 171.656 kb on - strand at 171.666 kb on + strand at 171.671 kb on + strand at 171.680 kb on + strand at 171.709 kb on + strand at 171.717 kb on - strand at 171.717 kb on - strand at 171.717 kb on - strand at 171.800 kb on - strand at 171.820 kb on + strand at 171.823 kb on - strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.825 kb on + strand at 171.826 kb on + strand at 171.828 kb on + strand at 171.828 kb on + strand at 171.828 kb on + strand at 171.830 kb on + strand at 171.830 kb on + strand at 171.830 kb on + strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.833 kb on - strand at 171.836 kb on - strand at 171.838 kb on - strand at 171.839 kb on - strand at 171.844 kb on - strand at 171.849 kb on - strand at 171.859 kb on - strand at 171.901 kb on - strand at 171.924 kb on + strand, within Dshi_0168 at 171.924 kb on + strand, within Dshi_0168 at 171.944 kb on + strand, within Dshi_0168 at 171.944 kb on + strand, within Dshi_0168 at 171.955 kb on + strand, within Dshi_0168 at 172.004 kb on + strand, within Dshi_0168 at 172.012 kb on - strand, within Dshi_0168 at 172.012 kb on - strand, within Dshi_0168 at 172.012 kb on - strand, within Dshi_0168 at 172.022 kb on - strand, within Dshi_0168 at 172.047 kb on - strand, within Dshi_0168 at 172.047 kb on - strand, within Dshi_0168 at 172.058 kb on - strand, within Dshi_0168 at 172.060 kb on + strand, within Dshi_0168 at 172.164 kb on - strand, within Dshi_0168 at 172.173 kb on - strand, within Dshi_0168 at 172.186 kb on + strand, within Dshi_0168 at 172.190 kb on + strand, within Dshi_0168 at 172.209 kb on + strand, within Dshi_0168 at 172.217 kb on - strand at 172.223 kb on + strand at 172.229 kb on + strand at 172.241 kb on + strand at 172.241 kb on + strand at 172.241 kb on + strand at 172.271 kb on + strand at 172.271 kb on + strand at 172.271 kb on + strand at 172.271 kb on + strand at 172.271 kb on + strand at 172.271 kb on + strand at 172.279 kb on - strand at 172.279 kb on - strand at 172.279 kb on - strand at 172.284 kb on - strand at 172.296 kb on - strand at 172.349 kb on - strand at 172.349 kb on - strand at 172.381 kb on + strand at 172.381 kb on + strand at 172.381 kb on + strand at 172.381 kb on - strand at 172.434 kb on - strand at 172.435 kb on + strand at 172.445 kb on + strand at 172.476 kb on - strand, within Dshi_0169 at 172.500 kb on + strand, within Dshi_0169 at 172.510 kb on + strand, within Dshi_0169 at 172.518 kb on - strand, within Dshi_0169 at 172.518 kb on - strand, within Dshi_0169 at 172.523 kb on + strand, within Dshi_0169 at 172.524 kb on + strand, within Dshi_0169 at 172.524 kb on + strand, within Dshi_0169 at 172.524 kb on + strand, within Dshi_0169 at 172.525 kb on + strand, within Dshi_0169 at 172.531 kb on + strand, within Dshi_0169 at 172.531 kb on + strand, within Dshi_0169 at 172.531 kb on + strand, within Dshi_0169 at 172.531 kb on + strand, within Dshi_0169 at 172.531 kb on + strand, within Dshi_0169 at 172.531 kb on + strand, within Dshi_0169 at 172.531 kb on + strand, within Dshi_0169 at 172.531 kb on + strand, within Dshi_0169 at 172.532 kb on - strand, within Dshi_0169 at 172.539 kb on - strand, within Dshi_0169 at 172.539 kb on - strand, within Dshi_0169 at 172.539 kb on - strand, within Dshi_0169 at 172.539 kb on - strand, within Dshi_0169 at 172.539 kb on - strand, within Dshi_0169 at 172.539 kb on - strand, within Dshi_0169 at 172.563 kb on + strand, within Dshi_0169 at 172.586 kb on - strand, within Dshi_0169
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.0005 mg/ml remove 171,406 - Dshi_0167 0.47 +0.4 171,446 + Dshi_0167 0.57 +2.6 171,506 + Dshi_0167 0.73 +0.8 171,618 + -1.3 171,618 + +2.8 171,625 + +0.1 171,625 + +0.6 171,628 - +1.0 171,641 - +1.3 171,651 - +0.2 171,656 - +0.1 171,666 + +0.2 171,671 + +0.2 171,680 + +0.1 171,709 + -0.5 171,717 - -1.3 171,717 - +0.3 171,717 - -0.2 171,800 - -0.4 171,820 + -0.2 171,823 - +0.7 171,825 + +0.3 171,825 + -0.4 171,825 + +0.4 171,825 + +0.7 171,825 + -0.5 171,825 + +0.5 171,825 + -0.2 171,825 + +0.1 171,825 + -0.1 171,825 + +0.1 171,825 + -0.3 171,825 + -0.8 171,825 + +0.7 171,825 + -0.5 171,825 + -0.5 171,825 + -1.4 171,825 + -0.7 171,825 + -2.4 171,825 + -0.1 171,825 + -0.3 171,825 + -1.0 171,825 + +0.1 171,825 + -0.3 171,825 + +0.1 171,825 + +0.8 171,826 + +0.8 171,828 + +0.7 171,828 + -0.2 171,828 + -1.6 171,830 + -0.2 171,830 + -0.2 171,830 + +0.0 171,833 - -0.3 171,833 - -0.3 171,833 - +0.4 171,833 - +0.3 171,833 - -0.2 171,833 - -0.2 171,833 - -0.1 171,833 - +0.6 171,833 - +0.0 171,833 - +0.2 171,833 - +0.0 171,833 - +1.0 171,833 - +0.3 171,833 - +0.5 171,833 - +1.1 171,833 - +0.8 171,833 - +0.0 171,833 - -0.2 171,833 - +0.5 171,833 - -0.1 171,833 - +0.1 171,833 - -1.0 171,836 - -1.2 171,838 - +0.1 171,839 - -0.8 171,844 - -0.5 171,849 - -1.1 171,859 - +0.6 171,901 - -0.6 171,924 + Dshi_0168 0.10 -1.5 171,924 + Dshi_0168 0.10 -0.7 171,944 + Dshi_0168 0.16 +0.2 171,944 + Dshi_0168 0.16 +0.1 171,955 + Dshi_0168 0.19 -1.1 172,004 + Dshi_0168 0.32 +0.2 172,012 - Dshi_0168 0.34 -0.1 172,012 - Dshi_0168 0.34 -1.6 172,012 - Dshi_0168 0.34 +0.1 172,022 - Dshi_0168 0.37 -0.6 172,047 - Dshi_0168 0.44 +0.5 172,047 - Dshi_0168 0.44 -0.2 172,058 - Dshi_0168 0.47 +0.6 172,060 + Dshi_0168 0.48 -0.4 172,164 - Dshi_0168 0.77 +0.6 172,173 - Dshi_0168 0.79 +0.3 172,186 + Dshi_0168 0.83 +0.4 172,190 + Dshi_0168 0.84 +0.3 172,209 + Dshi_0168 0.89 +0.4 172,217 - -0.4 172,223 + -1.1 172,229 + -0.9 172,241 + -0.4 172,241 + -0.7 172,241 + -0.1 172,271 + +0.0 172,271 + +0.4 172,271 + -0.7 172,271 + -0.8 172,271 + +0.5 172,271 + +0.0 172,279 - -1.0 172,279 - +0.2 172,279 - +1.6 172,284 - -0.6 172,296 - +0.1 172,349 - +0.0 172,349 - +0.4 172,381 + -0.6 172,381 + -0.5 172,381 + -1.9 172,381 - +0.9 172,434 - +0.7 172,435 + -0.6 172,445 + +0.8 172,476 - Dshi_0169 0.13 +0.2 172,500 + Dshi_0169 0.15 +1.0 172,510 + Dshi_0169 0.16 +0.1 172,518 - Dshi_0169 0.17 +0.6 172,518 - Dshi_0169 0.17 +0.0 172,523 + Dshi_0169 0.18 -0.1 172,524 + Dshi_0169 0.18 +0.1 172,524 + Dshi_0169 0.18 +1.2 172,524 + Dshi_0169 0.18 -0.4 172,525 + Dshi_0169 0.18 +0.2 172,531 + Dshi_0169 0.18 -0.2 172,531 + Dshi_0169 0.18 +0.7 172,531 + Dshi_0169 0.18 +2.6 172,531 + Dshi_0169 0.18 -0.4 172,531 + Dshi_0169 0.18 +1.2 172,531 + Dshi_0169 0.18 +0.1 172,531 + Dshi_0169 0.18 -1.6 172,531 + Dshi_0169 0.18 +0.9 172,532 - Dshi_0169 0.18 -0.7 172,539 - Dshi_0169 0.19 +0.4 172,539 - Dshi_0169 0.19 +0.1 172,539 - Dshi_0169 0.19 +0.9 172,539 - Dshi_0169 0.19 +0.7 172,539 - Dshi_0169 0.19 -0.4 172,539 - Dshi_0169 0.19 +0.4 172,563 + Dshi_0169 0.22 -0.2 172,586 - Dshi_0169 0.24 +1.8
Or see this region's nucleotide sequence