Experiment: MoYLS4 with Nitrite 0.025mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt guaB and DVU1045 are separated by 259 nucleotides DVU1045 and DVU1046 overlap by 8 nucleotides DVU1046 and ccmC are separated by 9 nucleotides ccmC and ccmB are separated by 51 nucleotides
DVU1044: guaB - inosine-5`-monophosphate dehydrogenase (TIGR), at 1,146,685 to 1,148,142
guaB
DVU1045: DVU1045 - hypothetical protein (TIGR), at 1,148,402 to 1,148,998
DVU1045
DVU1046: DVU1046 - hypothetical protein (TIGR), at 1,148,991 to 1,149,128
DVU1046
DVU1047: ccmC - cytochrome c-type biogenesis protein CcmC (TIGR), at 1,149,138 to 1,149,812
ccmC
DVU1048: ccmB - cytochrome c-type biogenesis protein CcmB (TIGR), at 1,149,864 to 1,150,541
ccmB
Position (kb)
1148
1149 Strain fitness (log2 ratio)
-2
-1
0
1 at 1148.196 kb on + strand at 1148.373 kb on + strand at 1148.383 kb on + strand at 1148.386 kb on - strand at 1148.391 kb on - strand at 1148.391 kb on - strand at 1148.481 kb on + strand, within DVU1045 at 1148.489 kb on - strand, within DVU1045 at 1148.499 kb on + strand, within DVU1045 at 1148.499 kb on + strand, within DVU1045 at 1148.499 kb on + strand, within DVU1045 at 1148.507 kb on - strand, within DVU1045 at 1148.507 kb on - strand, within DVU1045 at 1148.541 kb on + strand, within DVU1045 at 1148.637 kb on - strand, within DVU1045 at 1148.637 kb on - strand, within DVU1045 at 1148.637 kb on - strand, within DVU1045 at 1148.637 kb on - strand, within DVU1045 at 1148.693 kb on + strand, within DVU1045 at 1148.864 kb on - strand, within DVU1045 at 1148.865 kb on + strand, within DVU1045 at 1148.883 kb on - strand, within DVU1045 at 1148.883 kb on - strand, within DVU1045 at 1148.893 kb on - strand, within DVU1045 at 1148.893 kb on - strand, within DVU1045 at 1148.924 kb on + strand, within DVU1045 at 1148.924 kb on + strand, within DVU1045 at 1148.932 kb on - strand, within DVU1045 at 1149.143 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Nitrite 0.025mg/mL remove 1,148,196 + +0.0 1,148,373 + -0.4 1,148,383 + -1.1 1,148,386 - +0.4 1,148,391 - -0.0 1,148,391 - -0.3 1,148,481 + DVU1045 0.13 +0.5 1,148,489 - DVU1045 0.15 +0.2 1,148,499 + DVU1045 0.16 +0.6 1,148,499 + DVU1045 0.16 -0.8 1,148,499 + DVU1045 0.16 +0.2 1,148,507 - DVU1045 0.18 -0.3 1,148,507 - DVU1045 0.18 -0.0 1,148,541 + DVU1045 0.23 -1.1 1,148,637 - DVU1045 0.39 +0.2 1,148,637 - DVU1045 0.39 -0.6 1,148,637 - DVU1045 0.39 -2.0 1,148,637 - DVU1045 0.39 -2.0 1,148,693 + DVU1045 0.49 +0.8 1,148,864 - DVU1045 0.77 -0.3 1,148,865 + DVU1045 0.78 -2.7 1,148,883 - DVU1045 0.81 -0.5 1,148,883 - DVU1045 0.81 -0.4 1,148,893 - DVU1045 0.82 +0.1 1,148,893 - DVU1045 0.82 -0.9 1,148,924 + DVU1045 0.87 -0.1 1,148,924 + DVU1045 0.87 -1.0 1,148,932 - DVU1045 0.89 -1.6 1,149,143 - -0.4
Or see this region's nucleotide sequence