Experiment: MoYLS4 with Nitrite 0.025mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nifA-2 and DVUA0144 are separated by 214 nucleotides DVUA0144 and DORF2315 are separated by 499 nucleotides DORF2315 and DVUA0145 are separated by 25 nucleotides
DVUA0143: nifA-2 - nif-specific regulatory protein (TIGR), at 184,786 to 186,333
nifA-2
DVUA0144: DVUA0144 - hypothetical protein (TIGR), at 186,548 to 186,691
DVUA0144
DORF2315: DORF2315 - no description, at 187,191 to 187,322
DORF2315
DVUA0145: DVUA0145 - conserved domain protein (TIGR), at 187,348 to 191,274
DVUA0145
Position (kb) 187
188 Strain fitness (log2 ratio) -1
0
1
2 at 186.314 kb on - strand at 186.370 kb on - strand at 186.466 kb on + strand at 186.497 kb on + strand at 186.527 kb on + strand at 186.547 kb on - strand at 186.629 kb on + strand, within DVUA0144 at 186.631 kb on + strand, within DVUA0144 at 186.699 kb on + strand at 186.726 kb on - strand at 186.735 kb on + strand at 186.759 kb on + strand at 186.773 kb on - strand at 186.787 kb on + strand at 186.805 kb on - strand at 186.845 kb on + strand at 186.850 kb on + strand at 186.858 kb on - strand at 186.920 kb on + strand at 186.975 kb on + strand at 186.977 kb on - strand at 187.014 kb on + strand at 187.099 kb on - strand at 187.109 kb on - strand at 187.288 kb on - strand, within DORF2315 at 187.294 kb on + strand, within DORF2315 at 187.358 kb on + strand at 187.405 kb on - strand at 187.416 kb on + strand at 187.530 kb on - strand at 187.541 kb on - strand at 187.630 kb on - strand at 187.675 kb on - strand at 187.707 kb on + strand at 187.840 kb on - strand, within DVUA0145 at 187.846 kb on + strand, within DVUA0145 at 187.935 kb on + strand, within DVUA0145 at 187.935 kb on + strand, within DVUA0145 at 187.943 kb on - strand, within DVUA0145 at 187.955 kb on + strand, within DVUA0145 at 188.057 kb on - strand, within DVUA0145 at 188.065 kb on - strand, within DVUA0145 at 188.070 kb on - strand, within DVUA0145 at 188.072 kb on + strand, within DVUA0145 at 188.169 kb on - strand, within DVUA0145 at 188.212 kb on + strand, within DVUA0145 at 188.212 kb on + strand, within DVUA0145 at 188.220 kb on - strand, within DVUA0145 at 188.220 kb on - strand, within DVUA0145 at 188.302 kb on + strand, within DVUA0145 at 188.310 kb on - strand, within DVUA0145 at 188.314 kb on + strand, within DVUA0145 at 188.314 kb on + strand, within DVUA0145
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Nitrite 0.025mg/mL remove 186,314 - +0.1 186,370 - +0.0 186,466 + +0.4 186,497 + -0.4 186,527 + -0.0 186,547 - -0.2 186,629 + DVUA0144 0.56 +0.0 186,631 + DVUA0144 0.58 +0.6 186,699 + +0.0 186,726 - -0.0 186,735 + +0.5 186,759 + -1.1 186,773 - +0.4 186,787 + +0.1 186,805 - -0.9 186,845 + +0.5 186,850 + -0.5 186,858 - -0.0 186,920 + -0.9 186,975 + -0.1 186,977 - +2.0 187,014 + -0.0 187,099 - -0.2 187,109 - -0.0 187,288 - DORF2315 0.73 -1.1 187,294 + DORF2315 0.78 -0.4 187,358 + -0.3 187,405 - -0.6 187,416 + +0.9 187,530 - +0.9 187,541 - +0.0 187,630 - -0.1 187,675 - +0.4 187,707 + -0.3 187,840 - DVUA0145 0.13 -0.1 187,846 + DVUA0145 0.13 -0.7 187,935 + DVUA0145 0.15 +0.1 187,935 + DVUA0145 0.15 -0.8 187,943 - DVUA0145 0.15 +0.1 187,955 + DVUA0145 0.15 -0.2 188,057 - DVUA0145 0.18 +1.2 188,065 - DVUA0145 0.18 +0.1 188,070 - DVUA0145 0.18 -0.2 188,072 + DVUA0145 0.18 -0.1 188,169 - DVUA0145 0.21 -0.4 188,212 + DVUA0145 0.22 -0.0 188,212 + DVUA0145 0.22 +0.1 188,220 - DVUA0145 0.22 -0.4 188,220 - DVUA0145 0.22 -1.1 188,302 + DVUA0145 0.24 +0.0 188,310 - DVUA0145 0.24 -0.5 188,314 + DVUA0145 0.25 +0.3 188,314 + DVUA0145 0.25 -0.4
Or see this region's nucleotide sequence