Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS20870

Experiment: No vitamins t2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS20865 and HSERO_RS20870 are separated by 143 nucleotidesHSERO_RS20870 and HSERO_RS20875 are separated by 161 nucleotides HSERO_RS20865: HSERO_RS20865 - ABC transporter permease, at 4,773,354 to 4,774,613 _RS20865 HSERO_RS20870: HSERO_RS20870 - hypothetical protein, at 4,774,757 to 4,775,872 _RS20870 HSERO_RS20875: HSERO_RS20875 - hypothetical protein, at 4,776,034 to 4,776,795 _RS20875 Position (kb) 4774 4775 4776Strain fitness (log2 ratio) -1 0 1at 4773.779 kb on - strand, within HSERO_RS20865at 4773.797 kb on + strandat 4773.838 kb on + strand, within HSERO_RS20865at 4773.846 kb on - strand, within HSERO_RS20865at 4773.874 kb on + strand, within HSERO_RS20865at 4774.097 kb on + strand, within HSERO_RS20865at 4774.225 kb on - strand, within HSERO_RS20865at 4774.309 kb on - strand, within HSERO_RS20865at 4774.786 kb on - strandat 4774.796 kb on - strandat 4774.811 kb on + strandat 4774.876 kb on - strand, within HSERO_RS20870at 4775.016 kb on + strand, within HSERO_RS20870at 4775.016 kb on + strand, within HSERO_RS20870at 4775.071 kb on + strand, within HSERO_RS20870at 4775.161 kb on + strand, within HSERO_RS20870at 4775.161 kb on + strand, within HSERO_RS20870at 4775.210 kb on + strand, within HSERO_RS20870at 4775.228 kb on + strand, within HSERO_RS20870at 4775.251 kb on - strand, within HSERO_RS20870at 4775.294 kb on - strand, within HSERO_RS20870at 4775.301 kb on + strand, within HSERO_RS20870at 4775.301 kb on + strand, within HSERO_RS20870at 4775.433 kb on - strand, within HSERO_RS20870at 4775.539 kb on + strand, within HSERO_RS20870at 4775.631 kb on - strand, within HSERO_RS20870at 4775.658 kb on - strand, within HSERO_RS20870at 4775.806 kb on + strandat 4775.814 kb on - strandat 4775.816 kb on - strandat 4775.851 kb on - strandat 4775.853 kb on + strandat 4776.077 kb on - strandat 4776.219 kb on - strand, within HSERO_RS20875at 4776.302 kb on - strand, within HSERO_RS20875at 4776.332 kb on + strand, within HSERO_RS20875at 4776.413 kb on - strand, within HSERO_RS20875at 4776.416 kb on + strand, within HSERO_RS20875at 4776.424 kb on - strand, within HSERO_RS20875at 4776.457 kb on + strand, within HSERO_RS20875at 4776.525 kb on + strand, within HSERO_RS20875at 4776.589 kb on - strand, within HSERO_RS20875at 4776.595 kb on - strand, within HSERO_RS20875at 4776.717 kb on - strand, within HSERO_RS20875at 4776.841 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No vitamins t2
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4,773,779 - HSERO_RS20865 0.34 +0.7
4,773,797 + -1.0
4,773,838 + HSERO_RS20865 0.38 +0.1
4,773,846 - HSERO_RS20865 0.39 -0.8
4,773,874 + HSERO_RS20865 0.41 +0.7
4,774,097 + HSERO_RS20865 0.59 -0.0
4,774,225 - HSERO_RS20865 0.69 -0.0
4,774,309 - HSERO_RS20865 0.76 +0.5
4,774,786 - -0.4
4,774,796 - +0.0
4,774,811 + +0.2
4,774,876 - HSERO_RS20870 0.11 -0.0
4,775,016 + HSERO_RS20870 0.23 -0.0
4,775,016 + HSERO_RS20870 0.23 -0.1
4,775,071 + HSERO_RS20870 0.28 +0.8
4,775,161 + HSERO_RS20870 0.36 -0.7
4,775,161 + HSERO_RS20870 0.36 -0.3
4,775,210 + HSERO_RS20870 0.41 +0.5
4,775,228 + HSERO_RS20870 0.42 -0.1
4,775,251 - HSERO_RS20870 0.44 -0.0
4,775,294 - HSERO_RS20870 0.48 +0.5
4,775,301 + HSERO_RS20870 0.49 +1.0
4,775,301 + HSERO_RS20870 0.49 +0.9
4,775,433 - HSERO_RS20870 0.61 +0.6
4,775,539 + HSERO_RS20870 0.70 +0.8
4,775,631 - HSERO_RS20870 0.78 +1.4
4,775,658 - HSERO_RS20870 0.81 -1.0
4,775,806 + +0.5
4,775,814 - -0.1
4,775,816 - -0.8
4,775,851 - -0.0
4,775,853 + -0.0
4,776,077 - -0.9
4,776,219 - HSERO_RS20875 0.24 -0.6
4,776,302 - HSERO_RS20875 0.35 +0.1
4,776,332 + HSERO_RS20875 0.39 -0.0
4,776,413 - HSERO_RS20875 0.50 -1.4
4,776,416 + HSERO_RS20875 0.50 -0.3
4,776,424 - HSERO_RS20875 0.51 -0.4
4,776,457 + HSERO_RS20875 0.56 -0.5
4,776,525 + HSERO_RS20875 0.64 +0.2
4,776,589 - HSERO_RS20875 0.73 -0.3
4,776,595 - HSERO_RS20875 0.74 +0.2
4,776,717 - HSERO_RS20875 0.90 -1.0
4,776,841 - -0.6

Or see this region's nucleotide sequence