Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS20865

Experiment: No vitamins t2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS20860 and HSERO_RS20865 are separated by 44 nucleotidesHSERO_RS20865 and HSERO_RS20870 are separated by 143 nucleotides HSERO_RS20860: HSERO_RS20860 - hypothetical protein, at 4,772,449 to 4,773,309 _RS20860 HSERO_RS20865: HSERO_RS20865 - ABC transporter permease, at 4,773,354 to 4,774,613 _RS20865 HSERO_RS20870: HSERO_RS20870 - hypothetical protein, at 4,774,757 to 4,775,872 _RS20870 Position (kb) 4773 4774 4775Strain fitness (log2 ratio) -2 -1 0 1at 4772.463 kb on + strandat 4772.470 kb on - strandat 4772.507 kb on - strandat 4772.633 kb on + strand, within HSERO_RS20860at 4772.641 kb on - strand, within HSERO_RS20860at 4772.641 kb on - strand, within HSERO_RS20860at 4772.754 kb on + strand, within HSERO_RS20860at 4772.762 kb on - strand, within HSERO_RS20860at 4773.007 kb on - strand, within HSERO_RS20860at 4773.017 kb on - strand, within HSERO_RS20860at 4773.158 kb on + strand, within HSERO_RS20860at 4773.158 kb on + strand, within HSERO_RS20860at 4773.209 kb on - strand, within HSERO_RS20860at 4773.314 kb on - strandat 4773.340 kb on - strandat 4773.382 kb on + strandat 4773.414 kb on - strandat 4773.529 kb on - strand, within HSERO_RS20865at 4773.542 kb on - strand, within HSERO_RS20865at 4773.545 kb on + strand, within HSERO_RS20865at 4773.688 kb on + strand, within HSERO_RS20865at 4773.779 kb on - strand, within HSERO_RS20865at 4773.797 kb on + strandat 4773.838 kb on + strand, within HSERO_RS20865at 4773.846 kb on - strand, within HSERO_RS20865at 4773.874 kb on + strand, within HSERO_RS20865at 4774.097 kb on + strand, within HSERO_RS20865at 4774.225 kb on - strand, within HSERO_RS20865at 4774.309 kb on - strand, within HSERO_RS20865at 4774.786 kb on - strandat 4774.796 kb on - strandat 4774.811 kb on + strandat 4774.876 kb on - strand, within HSERO_RS20870at 4775.016 kb on + strand, within HSERO_RS20870at 4775.016 kb on + strand, within HSERO_RS20870at 4775.071 kb on + strand, within HSERO_RS20870at 4775.161 kb on + strand, within HSERO_RS20870at 4775.161 kb on + strand, within HSERO_RS20870at 4775.210 kb on + strand, within HSERO_RS20870at 4775.228 kb on + strand, within HSERO_RS20870at 4775.251 kb on - strand, within HSERO_RS20870at 4775.294 kb on - strand, within HSERO_RS20870at 4775.301 kb on + strand, within HSERO_RS20870at 4775.301 kb on + strand, within HSERO_RS20870at 4775.433 kb on - strand, within HSERO_RS20870at 4775.539 kb on + strand, within HSERO_RS20870

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Per-strain Table

Position Strand Gene LocusTag Fraction No vitamins t2
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4,772,463 + -0.3
4,772,470 - +1.2
4,772,507 - +0.3
4,772,633 + HSERO_RS20860 0.21 +0.1
4,772,641 - HSERO_RS20860 0.22 +0.4
4,772,641 - HSERO_RS20860 0.22 -0.0
4,772,754 + HSERO_RS20860 0.35 -0.0
4,772,762 - HSERO_RS20860 0.36 -2.3
4,773,007 - HSERO_RS20860 0.65 -1.1
4,773,017 - HSERO_RS20860 0.66 -0.0
4,773,158 + HSERO_RS20860 0.82 -1.7
4,773,158 + HSERO_RS20860 0.82 -1.5
4,773,209 - HSERO_RS20860 0.88 -0.0
4,773,314 - -0.5
4,773,340 - -0.8
4,773,382 + -2.0
4,773,414 - -2.3
4,773,529 - HSERO_RS20865 0.14 +0.4
4,773,542 - HSERO_RS20865 0.15 -0.9
4,773,545 + HSERO_RS20865 0.15 -1.0
4,773,688 + HSERO_RS20865 0.27 -1.0
4,773,779 - HSERO_RS20865 0.34 +0.7
4,773,797 + -1.0
4,773,838 + HSERO_RS20865 0.38 +0.1
4,773,846 - HSERO_RS20865 0.39 -0.8
4,773,874 + HSERO_RS20865 0.41 +0.7
4,774,097 + HSERO_RS20865 0.59 -0.0
4,774,225 - HSERO_RS20865 0.69 -0.0
4,774,309 - HSERO_RS20865 0.76 +0.5
4,774,786 - -0.4
4,774,796 - +0.0
4,774,811 + +0.2
4,774,876 - HSERO_RS20870 0.11 -0.0
4,775,016 + HSERO_RS20870 0.23 -0.0
4,775,016 + HSERO_RS20870 0.23 -0.1
4,775,071 + HSERO_RS20870 0.28 +0.8
4,775,161 + HSERO_RS20870 0.36 -0.7
4,775,161 + HSERO_RS20870 0.36 -0.3
4,775,210 + HSERO_RS20870 0.41 +0.5
4,775,228 + HSERO_RS20870 0.42 -0.1
4,775,251 - HSERO_RS20870 0.44 -0.0
4,775,294 - HSERO_RS20870 0.48 +0.5
4,775,301 + HSERO_RS20870 0.49 +1.0
4,775,301 + HSERO_RS20870 0.49 +0.9
4,775,433 - HSERO_RS20870 0.61 +0.6
4,775,539 + HSERO_RS20870 0.70 +0.8

Or see this region's nucleotide sequence