Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05580

Experiment: No vitamins t2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS05575 and HSERO_RS05580 are separated by 33 nucleotidesHSERO_RS05580 and HSERO_RS05585 are separated by 248 nucleotides HSERO_RS05575: HSERO_RS05575 - hypothetical protein, at 1,262,870 to 1,263,805 _RS05575 HSERO_RS05580: HSERO_RS05580 - cardiolipin synthase, at 1,263,839 to 1,265,257 _RS05580 HSERO_RS05585: HSERO_RS05585 - nitric oxide synthase, at 1,265,506 to 1,268,058 _RS05585 Position (kb) 1263 1264 1265 1266Strain fitness (log2 ratio) -1 0 1 2at 1262.893 kb on + strandat 1263.066 kb on + strand, within HSERO_RS05575at 1263.074 kb on - strand, within HSERO_RS05575at 1263.106 kb on + strand, within HSERO_RS05575at 1263.192 kb on - strand, within HSERO_RS05575at 1263.192 kb on - strand, within HSERO_RS05575at 1263.256 kb on + strand, within HSERO_RS05575at 1263.321 kb on - strand, within HSERO_RS05575at 1263.545 kb on - strandat 1263.557 kb on + strand, within HSERO_RS05575at 1263.560 kb on - strand, within HSERO_RS05575at 1263.586 kb on - strand, within HSERO_RS05575at 1263.623 kb on + strand, within HSERO_RS05575at 1263.906 kb on + strandat 1263.944 kb on - strandat 1264.015 kb on + strand, within HSERO_RS05580at 1264.025 kb on + strand, within HSERO_RS05580at 1264.171 kb on - strand, within HSERO_RS05580at 1264.201 kb on - strand, within HSERO_RS05580at 1264.218 kb on - strand, within HSERO_RS05580at 1264.263 kb on + strand, within HSERO_RS05580at 1264.277 kb on - strand, within HSERO_RS05580at 1264.346 kb on - strand, within HSERO_RS05580at 1264.442 kb on - strand, within HSERO_RS05580at 1264.536 kb on + strand, within HSERO_RS05580at 1264.755 kb on - strand, within HSERO_RS05580at 1264.787 kb on + strand, within HSERO_RS05580at 1265.073 kb on + strand, within HSERO_RS05580at 1265.073 kb on + strand, within HSERO_RS05580at 1265.073 kb on + strand, within HSERO_RS05580at 1265.081 kb on - strand, within HSERO_RS05580at 1265.081 kb on - strandat 1265.081 kb on - strand, within HSERO_RS05580at 1265.081 kb on - strand, within HSERO_RS05580at 1265.186 kb on - strandat 1265.306 kb on - strandat 1265.310 kb on + strandat 1265.323 kb on - strandat 1265.462 kb on + strandat 1265.641 kb on - strandat 1265.694 kb on - strandat 1265.884 kb on + strand, within HSERO_RS05585at 1266.007 kb on + strand, within HSERO_RS05585at 1266.205 kb on + strand, within HSERO_RS05585at 1266.234 kb on - strand, within HSERO_RS05585

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Per-strain Table

Position Strand Gene LocusTag Fraction No vitamins t2
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1,262,893 + +0.5
1,263,066 + HSERO_RS05575 0.21 -1.0
1,263,074 - HSERO_RS05575 0.22 -0.1
1,263,106 + HSERO_RS05575 0.25 -0.9
1,263,192 - HSERO_RS05575 0.34 -0.1
1,263,192 - HSERO_RS05575 0.34 -0.8
1,263,256 + HSERO_RS05575 0.41 +0.5
1,263,321 - HSERO_RS05575 0.48 +0.8
1,263,545 - -0.1
1,263,557 + HSERO_RS05575 0.73 -1.2
1,263,560 - HSERO_RS05575 0.74 +0.5
1,263,586 - HSERO_RS05575 0.76 +0.2
1,263,623 + HSERO_RS05575 0.80 +0.3
1,263,906 + +0.9
1,263,944 - +0.4
1,264,015 + HSERO_RS05580 0.12 +1.7
1,264,025 + HSERO_RS05580 0.13 +0.4
1,264,171 - HSERO_RS05580 0.23 -0.6
1,264,201 - HSERO_RS05580 0.26 +0.6
1,264,218 - HSERO_RS05580 0.27 +0.7
1,264,263 + HSERO_RS05580 0.30 -0.7
1,264,277 - HSERO_RS05580 0.31 +1.3
1,264,346 - HSERO_RS05580 0.36 -0.1
1,264,442 - HSERO_RS05580 0.42 +0.2
1,264,536 + HSERO_RS05580 0.49 +0.8
1,264,755 - HSERO_RS05580 0.65 +1.2
1,264,787 + HSERO_RS05580 0.67 -1.0
1,265,073 + HSERO_RS05580 0.87 +1.0
1,265,073 + HSERO_RS05580 0.87 -1.3
1,265,073 + HSERO_RS05580 0.87 -1.1
1,265,081 - HSERO_RS05580 0.88 -0.5
1,265,081 - +0.9
1,265,081 - HSERO_RS05580 0.88 +0.1
1,265,081 - HSERO_RS05580 0.88 +1.9
1,265,186 - +0.1
1,265,306 - -0.1
1,265,310 + +0.3
1,265,323 - -0.0
1,265,462 + -0.1
1,265,641 - +0.3
1,265,694 - -0.2
1,265,884 + HSERO_RS05585 0.15 -0.3
1,266,007 + HSERO_RS05585 0.20 +0.5
1,266,205 + HSERO_RS05585 0.27 +0.5
1,266,234 - HSERO_RS05585 0.29 -0.5

Or see this region's nucleotide sequence