Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3979

Experiment: inner cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	inner cut, LB soft agar motility assay
4,091,804	+				-0.1
4,091,805	-		Ga0059261_3977	0.79	-1.1
4,091,805	-		Ga0059261_3977	0.79	-0.0
4,091,805	-		Ga0059261_3977	0.79	+1.5
4,091,988	+				-1.2
4,091,988	+				+1.1
4,091,988	+				-0.4
4,091,988	+				+0.7
4,091,989	-				+1.9
4,091,989	-				-0.6
4,091,989	-				+1.8
4,091,989	-				-0.6
4,091,989	-				-2.1
4,091,997	+				-1.7
4,091,997	+				-0.7
4,092,007	+				+1.0
4,092,007	+				-2.9
4,092,007	+				-1.0
4,092,007	+				-0.6
4,092,007	+				-1.0
4,092,007	+				-1.2
4,092,008	-				+1.0
4,092,008	-				-0.1
4,092,008	-				-0.3
4,092,008	-				-1.2
4,092,008	-				-1.1
4,092,008	-				+1.5
4,092,008	-				-0.1
4,092,008	-				-2.2
4,092,029	+				+0.2
4,092,029	+				+1.0
4,092,029	+				-0.8
4,092,029	+				-3.1
4,092,029	+				-0.3
4,092,029	+				+0.6
4,092,029	+				-0.2
4,092,029	+				-0.6
4,092,030	-				+0.8
4,092,030	-				+1.9
4,092,030	-				+0.0
4,092,030	-				+0.3
4,092,083	+				-0.9
4,092,083	+				-0.7
4,092,084	-				-0.4
4,092,084	-				-0.4
4,092,084	-				+2.2
4,092,130	+				+0.2
4,092,130	+				-0.8
4,092,131	-				-0.5
4,092,168	-				+1.6
4,092,168	-				+1.6
4,092,170	+				+3.3
4,092,170	+				+0.3
4,092,170	+				-1.0
4,092,170	+				-0.6
4,092,170	+				-0.4
4,092,170	+				-1.4
4,092,170	+				-2.0
4,092,171	-				+0.3
4,092,171	-				-0.3
4,092,171	-				+0.7
4,092,171	-				+0.7
4,092,171	-				-2.1
4,092,171	-				-0.8
4,092,171	-				-1.1
4,092,171	-				-2.6
4,092,171	-				+1.7
4,092,171	-				-0.4
4,092,374	+		Ga0059261_3978	0.44	-0.7
4,092,375	-		Ga0059261_3978	0.44	-3.6
4,092,375	-		Ga0059261_3978	0.44	+1.6
4,092,375	-		Ga0059261_3978	0.44	-0.7
4,092,375	-		Ga0059261_3978	0.44	-0.5
4,092,375	-		Ga0059261_3978	0.44	+1.9
4,092,375	-		Ga0059261_3978	0.44	-0.4
4,092,449	+		Ga0059261_3978	0.59	-0.7
4,092,449	+		Ga0059261_3978	0.59	-1.9
4,092,449	+		Ga0059261_3978	0.59	+0.1
4,092,449	+		Ga0059261_3978	0.59	+0.2
4,092,449	+		Ga0059261_3978	0.59	-1.0
4,092,450	-		Ga0059261_3978	0.60	-1.1
4,092,450	-		Ga0059261_3978	0.60	-1.0
4,092,450	-		Ga0059261_3978	0.60	-0.7
4,092,450	-		Ga0059261_3978	0.60	-0.8
4,092,450	-		Ga0059261_3978	0.60	+0.2
4,092,450	-		Ga0059261_3978	0.60	-0.6
4,092,469	-		Ga0059261_3978	0.64	+10.1
4,092,469	-				+2.8
4,092,549	+		Ga0059261_3978	0.81	-0.6
4,092,550	-		Ga0059261_3978	0.81	+0.1
4,092,555	-		Ga0059261_3978	0.82	+1.3
4,092,569	+		Ga0059261_3978	0.85	+2.6
4,092,569	+		Ga0059261_3978	0.85	-0.5
4,092,569	+		Ga0059261_3978	0.85	+2.8
4,092,569	+		Ga0059261_3978	0.85	-0.5
4,092,569	+		Ga0059261_3978	0.85	+0.4
4,092,570	-		Ga0059261_3978	0.85	-1.5
4,092,570	-		Ga0059261_3978	0.85	-0.7
4,092,570	-		Ga0059261_3978	0.85	+1.4
4,092,682	+				-1.3
4,092,682	+				+2.7
4,092,691	+				-2.1
4,092,691	+				-0.4
4,092,691	+				-1.3
4,092,691	+				+0.2
4,092,691	+				+1.2
4,092,846	+				-0.1
4,092,928	+				+0.2
4,092,929	-		Ga0059261_3979	0.12	+4.2
4,093,067	-		Ga0059261_3979	0.20	-1.5
4,093,309	-		Ga0059261_3979	0.33	+0.6
4,093,309	-		Ga0059261_3979	0.33	-0.6
4,093,315	+		Ga0059261_3979	0.34	-0.8
4,093,324	+		Ga0059261_3979	0.34	-0.6
4,093,325	-		Ga0059261_3979	0.34	-0.4
4,093,492	-		Ga0059261_3979	0.43	-0.8
4,093,792	+				+0.2
4,093,793	-		Ga0059261_3979	0.60	+0.6
4,093,831	+		Ga0059261_3979	0.62	+0.2
4,093,831	+		Ga0059261_3979	0.62	-1.3
4,093,961	-		Ga0059261_3979	0.69	-0.1
4,094,020	+		Ga0059261_3979	0.73	-1.4
4,094,020	+		Ga0059261_3979	0.73	-0.1
4,094,020	+		Ga0059261_3979	0.73	-0.1
4,094,047	+				+0.6
4,094,083	+		Ga0059261_3979	0.76	+0.2
4,094,114	-		Ga0059261_3979	0.78	+0.2
4,094,381	-				+0.2
4,094,512	+				-0.5
4,094,512	+				-0.3
4,094,512	+				+1.7
4,094,513	-				-1.3
4,094,513	-				-0.5
4,094,513	-				+0.6
4,094,513	-				-0.7
4,094,513	-				+0.6
4,094,513	-				-1.4
4,094,672	-		Ga0059261_3980	0.22	-2.3
4,094,672	-		Ga0059261_3980	0.22	-1.9
4,094,672	-		Ga0059261_3980	0.22	+3.3
4,094,672	-		Ga0059261_3980	0.22	-1.3
4,094,731	+		Ga0059261_3980	0.33	+0.8
4,094,732	-		Ga0059261_3980	0.33	-0.7
4,094,732	-		Ga0059261_3980	0.33	+0.6
4,094,732	-		Ga0059261_3980	0.33	-2.9
4,094,827	+		Ga0059261_3980	0.50	-1.3
4,094,827	+		Ga0059261_3980	0.50	-1.0
4,094,827	+		Ga0059261_3980	0.50	+0.7
4,094,827	+		Ga0059261_3980	0.50	-1.5
4,094,828	-		Ga0059261_3980	0.50	+0.6
4,094,828	-		Ga0059261_3980	0.50	+0.1
4,094,876	+		Ga0059261_3980	0.59	+0.1
4,094,876	+		Ga0059261_3980	0.59	+1.1
4,094,876	+		Ga0059261_3980	0.59	+0.2
4,094,876	+		Ga0059261_3980	0.59	-0.8
4,094,876	+		Ga0059261_3980	0.59	-0.1
4,094,876	+		Ga0059261_3980	0.59	+2.0
4,094,876	+		Ga0059261_3980	0.59	-2.0
4,094,876	+		Ga0059261_3980	0.59	+0.7
4,094,876	+		Ga0059261_3980	0.59	+0.2
4,094,876	+		Ga0059261_3980	0.59	-0.4
4,094,877	-		Ga0059261_3980	0.59	-1.2
4,094,877	-		Ga0059261_3980	0.59	+3.4
4,094,877	-		Ga0059261_3980	0.59	-0.8
4,094,877	-				-0.6
4,095,016	+		Ga0059261_3980	0.84	-2.0
4,095,017	-		Ga0059261_3980	0.84	+1.7
4,095,017	-		Ga0059261_3980	0.84	+2.0
4,095,079	+				-0.0
4,095,080	-				-0.6
4,095,080	-				-0.6
4,095,173	-				+1.5
4,095,173	-				-1.3
4,095,181	+				-1.9
4,095,181	+				-1.7
4,095,181	+				-0.8
4,095,182	-				-1.8
4,095,182	-				+0.8
4,095,312	-		Ga0059261_3981	0.10	+0.1
4,095,328	+		Ga0059261_3981	0.11	-1.3
4,095,328	+				+0.6
4,095,329	-		Ga0059261_3981	0.11	-0.6
4,095,329	-				-0.1
4,095,363	+		Ga0059261_3981	0.14	-0.5
4,095,364	-		Ga0059261_3981	0.14	-0.5
4,095,364	-				+2.2
4,095,376	+		Ga0059261_3981	0.15	+0.2
4,095,376	+		Ga0059261_3981	0.15	+0.0
4,095,397	+		Ga0059261_3981	0.16	+0.6
4,095,397	+		Ga0059261_3981	0.16	-1.7
4,095,398	-		Ga0059261_3981	0.16	+0.7
4,095,398	-		Ga0059261_3981	0.16	-0.1
4,095,439	+		Ga0059261_3981	0.19	-1.3
4,095,440	-		Ga0059261_3981	0.19	+1.2
4,095,440	-		Ga0059261_3981	0.19	-2.0