Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3851

Experiment: inner cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	inner cut, LB soft agar motility assay
3,952,754	+		Ga0059261_3850	0.56	+1.2
3,952,754	+		Ga0059261_3850	0.56	-0.6
3,952,754	+		Ga0059261_3850	0.56	-0.1
3,952,754	+		Ga0059261_3850	0.56	-0.7
3,952,755	-		Ga0059261_3850	0.56	-0.1
3,952,755	-		Ga0059261_3850	0.56	+1.0
3,952,755	-		Ga0059261_3850	0.56	+2.2
3,952,771	-		Ga0059261_3850	0.57	-0.3
3,952,771	-		Ga0059261_3850	0.57	+1.4
3,952,771	-		Ga0059261_3850	0.57	-0.6
3,952,847	+		Ga0059261_3850	0.63	-0.6
3,952,847	+		Ga0059261_3850	0.63	-3.3
3,952,847	+		Ga0059261_3850	0.63	-0.6
3,952,847	+		Ga0059261_3850	0.63	-0.3
3,952,847	+		Ga0059261_3850	0.63	-1.1
3,952,848	-		Ga0059261_3850	0.64	-0.4
3,952,848	-		Ga0059261_3850	0.64	-1.1
3,952,848	-		Ga0059261_3850	0.64	-1.5
3,952,848	-		Ga0059261_3850	0.64	+1.8
3,952,848	-		Ga0059261_3850	0.64	-2.0
3,952,848	-		Ga0059261_3850	0.64	-0.6
3,952,848	-		Ga0059261_3850	0.64	-2.4
3,952,848	-		Ga0059261_3850	0.64	-0.2
3,952,848	-		Ga0059261_3850	0.64	-1.7
3,952,848	-		Ga0059261_3850	0.64	+0.6
3,952,862	+		Ga0059261_3850	0.65	-0.9
3,952,862	+		Ga0059261_3850	0.65	+0.2
3,952,863	-		Ga0059261_3850	0.65	-1.0
3,953,065	-		Ga0059261_3850	0.81	+2.7
3,953,213	+				-0.4
3,953,213	+				-1.0
3,953,214	-				-2.8
3,953,219	+				+0.6
3,953,219	+				-0.4
3,953,219	+				-0.2
3,953,219	+				-1.8
3,953,219	+				-0.4
3,953,220	-				+0.3
3,953,220	-				-1.6
3,953,220	-				+0.6
3,953,220	-				+1.1
3,953,220	-				-0.1
3,953,220	-				-1.7
3,953,220	-				-0.3
3,953,220	-				+2.2
3,953,221	+				+2.1
3,953,221	+				-1.3
3,953,222	-				-0.1
3,953,222	-				-0.1
3,953,314	+				+1.3
3,953,315	-				-1.1
3,953,315	-				-0.5
3,953,319	+				+0.5
3,953,319	+				-0.7
3,953,319	+				-0.6
3,953,320	-				+0.3
3,953,320	-				-2.4
3,953,436	+				-2.4
3,953,454	+				+0.2
3,953,455	-				-0.1
3,953,455	-				-0.8
3,953,626	-				-0.6
3,953,626	-				-0.5
3,953,645	+				-0.6
3,953,645	+				+2.9
3,953,645	+				+1.9
3,953,646	-				+0.2
3,953,646	-				-1.7
3,953,646	-				-0.6
3,953,646	-				-1.4
3,953,903	+		Ga0059261_3851	0.16	+2.4
3,953,903	+		Ga0059261_3851	0.16	+0.3
3,953,904	-		Ga0059261_3851	0.16	+1.5
3,953,904	-		Ga0059261_3851	0.16	-0.2
3,953,957	+		Ga0059261_3851	0.19	-2.4
3,953,957	+		Ga0059261_3851	0.19	-0.3
3,953,966	+		Ga0059261_3851	0.20	+1.6
3,953,967	-				-0.4
3,954,002	+		Ga0059261_3851	0.22	-1.9
3,954,002	+		Ga0059261_3851	0.22	-1.0
3,954,002	+		Ga0059261_3851	0.22	+1.6
3,954,002	+		Ga0059261_3851	0.22	-0.6
3,954,003	-		Ga0059261_3851	0.22	+0.2
3,954,003	-		Ga0059261_3851	0.22	-0.1
3,954,045	+		Ga0059261_3851	0.25	-1.3
3,954,045	+		Ga0059261_3851	0.25	+2.2
3,954,045	+		Ga0059261_3851	0.25	-1.4
3,954,045	+		Ga0059261_3851	0.25	+1.2
3,954,046	-		Ga0059261_3851	0.25	-0.8
3,954,046	-		Ga0059261_3851	0.25	-3.4
3,954,046	-		Ga0059261_3851	0.25	+2.2
3,954,046	-		Ga0059261_3851	0.25	+0.3
3,954,046	-		Ga0059261_3851	0.25	+0.6
3,954,046	-		Ga0059261_3851	0.25	+0.1
3,954,046	-		Ga0059261_3851	0.25	+0.7
3,954,046	-		Ga0059261_3851	0.25	-0.5
3,954,046	-		Ga0059261_3851	0.25	+0.4
3,954,046	-		Ga0059261_3851	0.25	-1.3
3,954,046	-		Ga0059261_3851	0.25	+1.9
3,954,046	-		Ga0059261_3851	0.25	-0.7
3,954,048	-		Ga0059261_3851	0.25	-0.6
3,954,077	+		Ga0059261_3851	0.27	-0.2
3,954,077	+		Ga0059261_3851	0.27	+0.1
3,954,077	+		Ga0059261_3851	0.27	+2.5
3,954,077	+		Ga0059261_3851	0.27	+0.7
3,954,077	+		Ga0059261_3851	0.27	+2.9
3,954,078	-		Ga0059261_3851	0.27	-0.5
3,954,078	-		Ga0059261_3851	0.27	+1.5
3,954,079	-		Ga0059261_3851	0.27	-1.0
3,954,293	+		Ga0059261_3851	0.41	-0.5
3,954,293	+		Ga0059261_3851	0.41	+0.3
3,954,293	+		Ga0059261_3851	0.41	+0.2
3,954,293	+		Ga0059261_3851	0.41	+1.6
3,954,293	+		Ga0059261_3851	0.41	-0.9
3,954,293	+		Ga0059261_3851	0.41	+1.5
3,954,294	-		Ga0059261_3851	0.41	+0.1
3,954,294	-		Ga0059261_3851	0.41	+0.8
3,954,294	-		Ga0059261_3851	0.41	-0.5
3,954,294	-		Ga0059261_3851	0.41	-0.6
3,954,409	+		Ga0059261_3851	0.48	-0.3
3,954,410	-				+3.8
3,954,501	-		Ga0059261_3851	0.54	-0.7
3,954,501	-		Ga0059261_3851	0.54	-1.2
3,954,501	-		Ga0059261_3851	0.54	-1.7
3,954,501	-		Ga0059261_3851	0.54	+1.0
3,954,501	-		Ga0059261_3851	0.54	+0.1
3,954,501	-		Ga0059261_3851	0.54	-0.1
3,954,501	-		Ga0059261_3851	0.54	-1.4
3,954,570	-		Ga0059261_3851	0.58	+0.2
3,954,570	-		Ga0059261_3851	0.58	-1.3
3,954,692	+		Ga0059261_3851	0.66	-1.9
3,954,692	+		Ga0059261_3851	0.66	-1.0
3,954,693	-		Ga0059261_3851	0.66	+0.5
3,954,693	-		Ga0059261_3851	0.66	+0.4
3,954,693	-		Ga0059261_3851	0.66	+2.6
3,954,693	-		Ga0059261_3851	0.66	+0.2
3,954,828	-		Ga0059261_3851	0.75	-1.7
3,954,922	+		Ga0059261_3851	0.81	-1.6
3,954,923	-		Ga0059261_3851	0.81	-1.7
3,954,985	-		Ga0059261_3851	0.85	-0.5
3,955,051	+		Ga0059261_3851	0.89	-0.4
3,955,052	-		Ga0059261_3851	0.89	+1.9
3,955,052	-		Ga0059261_3851	0.89	-1.2
3,955,052	-		Ga0059261_3851	0.89	+1.5
3,955,052	-		Ga0059261_3851	0.89	-1.3
3,955,066	-				-0.4
3,955,131	+				-0.6
3,955,142	+				-0.7
3,955,142	+				-1.3
3,955,143	-				-1.9
3,955,143	-				+1.4
3,955,143	-				+1.6
3,955,143	-				+1.1
3,955,167	+				-1.5
3,955,167	+				-2.7
3,955,184	+				+0.8
3,955,184	+				-0.3
3,955,598	+		Ga0059261_3852	0.37	+1.6
3,955,599	-		Ga0059261_3852	0.37	-1.5
3,955,600	+		Ga0059261_3852	0.37	-1.3
3,955,600	+		Ga0059261_3852	0.37	+1.6
3,955,600	+		Ga0059261_3852	0.37	-0.5
3,955,600	+		Ga0059261_3852	0.37	-1.4
3,955,601	-		Ga0059261_3852	0.38	-0.1
3,955,601	-		Ga0059261_3852	0.38	+1.0
3,955,601	-		Ga0059261_3852	0.38	+1.4
3,955,601	-		Ga0059261_3852	0.38	+1.4
3,955,601	-		Ga0059261_3852	0.38	+1.7
3,955,601	-		Ga0059261_3852	0.38	-1.4
3,955,601	-		Ga0059261_3852	0.38	-1.1
3,955,636	+		Ga0059261_3852	0.41	+0.7
3,955,636	+		Ga0059261_3852	0.41	-1.9
3,955,636	+		Ga0059261_3852	0.41	-2.0
3,955,636	+		Ga0059261_3852	0.41	-0.4
3,955,636	+		Ga0059261_3852	0.41	+0.6
3,955,636	+		Ga0059261_3852	0.41	-0.1
3,955,636	+		Ga0059261_3852	0.41	-0.8
3,955,636	+		Ga0059261_3852	0.41	+2.0
3,955,636	+		Ga0059261_3852	0.41	+0.2
3,955,636	+		Ga0059261_3852	0.41	+1.2
3,955,636	+		Ga0059261_3852	0.41	+1.7
3,955,637	-		Ga0059261_3852	0.41	-0.2
3,955,637	-		Ga0059261_3852	0.41	-1.1
3,955,637	-		Ga0059261_3852	0.41	-1.0
3,955,637	-		Ga0059261_3852	0.41	-0.7
3,955,637	-		Ga0059261_3852	0.41	+0.2
3,955,637	-		Ga0059261_3852	0.41	+0.3
3,955,637	-		Ga0059261_3852	0.41	+0.2
3,955,637	-				+0.6
3,955,637	-		Ga0059261_3852	0.41	+2.5
3,955,637	-		Ga0059261_3852	0.41	-3.0
3,955,637	-		Ga0059261_3852	0.41	-0.2
3,955,637	-		Ga0059261_3852	0.41	-1.8
3,955,637	-		Ga0059261_3852	0.41	-1.1
3,955,637	-		Ga0059261_3852	0.41	-0.1
3,955,702	+		Ga0059261_3852	0.47	-2.0
3,955,702	+		Ga0059261_3852	0.47	+0.3
3,955,879	+		Ga0059261_3852	0.65	-0.1
3,955,879	+		Ga0059261_3852	0.65	-0.9
3,955,879	+		Ga0059261_3852	0.65	-1.4
3,955,880	-		Ga0059261_3852	0.65	-1.2
3,955,880	-		Ga0059261_3852	0.65	-1.4
3,955,912	+		Ga0059261_3852	0.68	+0.1
3,955,912	+		Ga0059261_3852	0.68	-0.6
3,955,912	+		Ga0059261_3852	0.68	+0.6
3,955,912	+		Ga0059261_3852	0.68	-0.0
3,955,912	+		Ga0059261_3852	0.68	+0.0
3,955,912	+		Ga0059261_3852	0.68	+0.2
3,955,912	+		Ga0059261_3852	0.68	+0.2
3,955,912	+		Ga0059261_3852	0.68	+0.3
3,955,912	+		Ga0059261_3852	0.68	-0.2
3,955,912	+		Ga0059261_3852	0.68	-1.4
3,955,912	+		Ga0059261_3852	0.68	-0.7
3,955,913	-		Ga0059261_3852	0.68	+0.2
3,955,913	-		Ga0059261_3852	0.68	-1.0
3,955,913	-		Ga0059261_3852	0.68	-0.4
3,955,913	-		Ga0059261_3852	0.68	+1.9
3,955,913	-		Ga0059261_3852	0.68	+1.0
3,955,999	+		Ga0059261_3852	0.77	+0.2
3,955,999	+		Ga0059261_3852	0.77	+1.2
3,956,000	-		Ga0059261_3852	0.77	-0.1
3,956,041	+		Ga0059261_3852	0.81	+0.7
3,956,041	+		Ga0059261_3852	0.81	+0.5
3,956,042	-		Ga0059261_3852	0.81	+2.9
3,956,061	+		Ga0059261_3852	0.83	+0.6
3,956,061	+		Ga0059261_3852	0.83	+2.8
3,956,061	+		Ga0059261_3852	0.83	-1.2
3,956,061	+		Ga0059261_3852	0.83	-1.3
3,956,061	+		Ga0059261_3852	0.83	+0.1
3,956,061	+		Ga0059261_3852	0.83	+1.3
3,956,062	-		Ga0059261_3852	0.83	+2.6
3,956,062	-		Ga0059261_3852	0.83	-1.5
3,956,142	+				+0.6
3,956,142	+				-1.9
3,956,142	+				+0.1
3,956,185	+				-0.4
3,956,185	+				+2.2
3,956,185	+				-1.1
3,956,185	+				-0.3
3,956,185	+				+0.3
3,956,185	+				+0.5
3,956,185	+				-2.4
3,956,185	+				+0.5
3,956,185	+				+1.4
3,956,185	+				+0.0
3,956,185	+				+1.2
3,956,186	-				+1.5
3,956,186	-				+2.2
3,956,186	-				-0.3
3,956,186	-				-1.7
3,956,186	-				+1.3
3,956,186	-				+2.4
3,956,186	-				+0.3
3,956,186	-				+0.6