Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3547

Experiment: inner cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	inner cut, LB soft agar motility assay
3,672,605	+				+0.0
3,672,605	+				+0.8
3,672,605	+				+2.2
3,672,606	-				+1.1
3,672,606	-				+0.6
3,672,657	+				-0.5
3,672,657	+				-0.9
3,672,657	+				-0.5
3,672,657	+				-0.2
3,672,657	+				+1.6
3,672,658	-				-1.0
3,672,658	-				+0.6
3,672,694	+				+0.6
3,672,694	+				-1.5
3,672,695	-				-1.9
3,672,695	-				+0.5
3,672,722	+				-0.4
3,672,722	+				-1.5
3,672,722	+				-0.6
3,672,722	+				+0.3
3,672,722	+				-1.1
3,672,722	+				-2.4
3,672,722	+				+1.3
3,672,723	-				-0.6
3,672,723	-				+0.6
3,672,723	-				+0.5
3,672,723	-				+0.1
3,672,949	+				-1.8
3,672,949	+				+0.8
3,672,949	+				+0.8
3,672,949	+				+0.6
3,672,949	+				+1.8
3,672,949	+				+0.2
3,672,950	-				-0.1
3,672,950	-				+2.2
3,672,950	-				+1.2
3,672,950	-				-1.3
3,673,099	+		Ga0059261_3545	0.78	+0.7
3,673,099	+		Ga0059261_3545	0.78	-0.8
3,673,099	+		Ga0059261_3545	0.78	+1.1
3,673,162	+				+2.2
3,673,163	-				-0.6
3,673,256	+		Ga0059261_3546	0.56	-2.4
3,673,256	+		Ga0059261_3546	0.56	-0.8
3,673,256	+		Ga0059261_3546	0.56	+1.2
3,673,256	+		Ga0059261_3546	0.56	+1.6
3,673,256	+		Ga0059261_3546	0.56	+1.8
3,673,256	+		Ga0059261_3546	0.56	-2.0
3,673,256	+		Ga0059261_3546	0.56	+2.9
3,673,256	+		Ga0059261_3546	0.56	+0.3
3,673,256	+		Ga0059261_3546	0.56	-0.6
3,673,256	+		Ga0059261_3546	0.56	+0.0
3,673,256	+		Ga0059261_3546	0.56	-0.3
3,673,257	-		Ga0059261_3546	0.56	+1.4
3,673,257	-		Ga0059261_3546	0.56	+0.2
3,673,257	-		Ga0059261_3546	0.56	+2.2
3,673,257	-		Ga0059261_3546	0.56	-2.3
3,673,257	-		Ga0059261_3546	0.56	+1.3
3,673,257	-		Ga0059261_3546	0.56	-0.1
3,673,257	-		Ga0059261_3546	0.56	-0.3
3,673,257	-		Ga0059261_3546	0.56	+1.5
3,673,305	-		Ga0059261_3546	0.84	-0.4
3,673,327	+				-0.5
3,673,327	+				-0.4
3,673,327	+				+2.1
3,673,328	-				-1.9
3,673,328	-				-0.6
3,673,328	-				-0.7
3,673,328	-				+0.3
3,673,328	-				+0.7
3,673,483	+				-1.9
3,673,483	+				-0.6
3,673,483	+				-0.2
3,673,484	-				-0.4
3,673,484	-				-1.9
3,673,484	-				+0.9
3,673,484	-				+0.2
3,673,590	+				-2.0
3,673,590	+				-0.3
3,673,590	+				+1.5
3,673,591	-				-1.6
3,673,591	-				-1.7
3,673,591	-				-1.5
3,673,591	-				-1.3
3,673,677	+				+1.0
3,673,695	+				-0.6
3,673,769	+		Ga0059261_3547	0.14	+0.8
3,673,769	+		Ga0059261_3547	0.14	-0.0
3,673,769	+		Ga0059261_3547	0.14	-0.7
3,673,770	-		Ga0059261_3547	0.14	-0.0
3,673,860	+		Ga0059261_3547	0.21	-1.2
3,673,860	+		Ga0059261_3547	0.21	-2.0
3,673,861	-		Ga0059261_3547	0.21	-1.0
3,673,861	-		Ga0059261_3547	0.21	+0.4
3,673,883	+		Ga0059261_3547	0.23	-0.4
3,673,884	-		Ga0059261_3547	0.23	+0.9
3,673,884	-		Ga0059261_3547	0.23	-0.4
3,673,933	+		Ga0059261_3547	0.27	-0.9
3,673,933	+		Ga0059261_3547	0.27	-0.4
3,673,933	+		Ga0059261_3547	0.27	+0.0
3,673,934	-		Ga0059261_3547	0.27	-1.2
3,673,934	-		Ga0059261_3547	0.27	+0.4
3,673,934	-		Ga0059261_3547	0.27	-1.1
3,673,934	-		Ga0059261_3547	0.27	-1.4
3,673,934	-		Ga0059261_3547	0.27	-2.0
3,674,039	+		Ga0059261_3547	0.35	+1.2
3,674,039	+		Ga0059261_3547	0.35	-2.4
3,674,040	-		Ga0059261_3547	0.35	-0.8
3,674,040	-		Ga0059261_3547	0.35	-2.0
3,674,040	-		Ga0059261_3547	0.35	+0.4
3,674,095	+		Ga0059261_3547	0.39	+1.2
3,674,095	+		Ga0059261_3547	0.39	+0.5
3,674,096	-		Ga0059261_3547	0.39	-1.0
3,674,451	+		Ga0059261_3547	0.67	-2.1
3,674,451	+		Ga0059261_3547	0.67	+2.2
3,674,451	+		Ga0059261_3547	0.67	+3.1
3,674,451	+		Ga0059261_3547	0.67	-3.0
3,674,451	+		Ga0059261_3547	0.67	-1.5
3,674,451	+		Ga0059261_3547	0.67	-1.1
3,674,452	-		Ga0059261_3547	0.67	-1.1
3,674,452	-		Ga0059261_3547	0.67	+0.1
3,674,452	-		Ga0059261_3547	0.67	-1.5
3,674,452	-		Ga0059261_3547	0.67	+1.1
3,674,452	-		Ga0059261_3547	0.67	+2.2
3,674,537	+		Ga0059261_3547	0.74	-1.1
3,674,537	+		Ga0059261_3547	0.74	-1.1
3,674,537	+		Ga0059261_3547	0.74	-1.2
3,674,538	-		Ga0059261_3547	0.74	+1.0
3,674,599	+		Ga0059261_3547	0.79	-0.9
3,674,599	+		Ga0059261_3547	0.79	-1.8
3,674,599	+		Ga0059261_3547	0.79	-0.4
3,674,599	+		Ga0059261_3547	0.79	-2.7
3,674,600	-		Ga0059261_3547	0.79	-2.0
3,674,600	-		Ga0059261_3547	0.79	+1.2
3,674,600	-		Ga0059261_3547	0.79	-0.9
3,674,600	-		Ga0059261_3547	0.79	+0.4
3,674,649	-		Ga0059261_3547	0.83	-3.1
3,674,752	+				+0.6
3,674,752	+				-0.5
3,674,752	+				-1.2
3,674,752	+				-1.9
3,674,752	+				+1.2
3,674,753	-				-1.5
3,674,753	-				-1.1
3,674,753	-				-1.1
3,674,753	-				+2.2
3,674,753	-				-1.4
3,674,753	-				+0.6
3,674,967	+		Ga0059261_3548	0.27	-1.9
3,674,967	+		Ga0059261_3548	0.27	+0.2
3,674,967	+		Ga0059261_3548	0.27	-0.2
3,674,968	-		Ga0059261_3548	0.27	+0.7
3,674,968	-		Ga0059261_3548	0.27	-2.0
3,674,968	-		Ga0059261_3548	0.27	+0.7
3,674,968	-		Ga0059261_3548	0.27	+0.3
3,674,968	-		Ga0059261_3548	0.27	-1.0
3,674,968	-		Ga0059261_3548	0.27	-0.1
3,674,968	-		Ga0059261_3548	0.27	+0.3
3,674,988	+		Ga0059261_3548	0.32	-1.3
3,675,139	-		Ga0059261_3548	0.73	+0.6
3,675,140	+		Ga0059261_3548	0.73	-2.7
3,675,140	+		Ga0059261_3548	0.73	+0.3
3,675,140	+		Ga0059261_3548	0.73	+1.2
3,675,140	+		Ga0059261_3548	0.73	-0.4
3,675,140	+		Ga0059261_3548	0.73	+0.9
3,675,140	+		Ga0059261_3548	0.73	-1.7
3,675,140	+		Ga0059261_3548	0.73	-1.3
3,675,141	-		Ga0059261_3548	0.74	-0.2
3,675,141	-		Ga0059261_3548	0.74	+1.1
3,675,141	-		Ga0059261_3548	0.74	-0.4
3,675,141	-		Ga0059261_3548	0.74	+1.0
3,675,141	-		Ga0059261_3548	0.74	-1.2
3,675,141	-		Ga0059261_3548	0.74	+0.7
3,675,141	-		Ga0059261_3548	0.74	-0.8
3,675,141	-		Ga0059261_3548	0.74	+0.2
3,675,252	+				+1.3
3,675,253	-				+0.5
3,675,289	+				-0.6
3,675,320	+				+1.2
3,675,383	+				-0.6
3,675,383	+				+1.4
3,675,383	+				-0.9
3,675,383	+				+1.2
3,675,384	-				-1.5
3,675,384	-				-2.8
3,675,539	-				-0.5
3,675,540	+				+0.1
3,675,540	+				-0.6
3,675,540	+				+2.8
3,675,540	+				-0.7
3,675,540	+				-1.1
3,675,540	+				-2.8
3,675,540	+				-0.2
3,675,540	+				-0.9
3,675,540	+				+2.2
3,675,540	+				-1.0
3,675,540	+				+1.2
3,675,541	-				+1.4
3,675,541	-				+2.1
3,675,541	-				-0.6
3,675,541	-				+0.1
3,675,541	-				+1.6
3,675,541	-				-0.6
3,675,541	-				+0.2
3,675,541	-				-2.2
3,675,541	-				-1.2
3,675,541	-				+0.3
3,675,541	-				+0.4
3,675,541	-				-0.2
3,675,541	-				+0.1
3,675,541	-				+2.2
3,675,541	-				+1.3
3,675,541	-				-1.7
3,675,552	+				+0.2
3,675,552	+				+4.9
3,675,552	+				+0.3
3,675,553	-				-1.9
3,675,553	-				-0.9
3,675,553	-				+1.5
3,675,553	-				-1.2
3,675,565	+				+1.1
3,675,566	-				+0.3
3,675,566	-				-0.8
3,675,566	-				+1.4
3,675,729	+		Ga0059261_3549	0.29	+0.4
3,675,823	+		Ga0059261_3549	0.47	-0.3