Experiment: inner cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_1769 and Ga0059261_1770 are separated by 121 nucleotides Ga0059261_1770 and Ga0059261_1771 are separated by 2 nucleotides Ga0059261_1771 and Ga0059261_1772 are separated by 139 nucleotides
Ga0059261_1769: Ga0059261_1769 - hypothetical protein, at 1,875,816 to 1,876,274
_1769
Ga0059261_1770: Ga0059261_1770 - hypothetical protein, at 1,876,396 to 1,877,022
_1770
Ga0059261_1771: Ga0059261_1771 - hypothetical protein, at 1,877,025 to 1,877,546
_1771
Ga0059261_1772: Ga0059261_1772 - MobA/MobL family, at 1,877,686 to 1,879,497
_1772
Position (kb) 1877
1878 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 1876.063 kb on + strand, within Ga0059261_1769 at 1876.117 kb on + strand, within Ga0059261_1769 at 1876.117 kb on + strand, within Ga0059261_1769 at 1876.118 kb on - strand, within Ga0059261_1769 at 1876.118 kb on - strand, within Ga0059261_1769 at 1876.118 kb on - strand, within Ga0059261_1769 at 1876.118 kb on - strand, within Ga0059261_1769 at 1876.118 kb on - strand, within Ga0059261_1769 at 1876.118 kb on - strand, within Ga0059261_1769 at 1876.118 kb on - strand, within Ga0059261_1769 at 1876.118 kb on - strand, within Ga0059261_1769 at 1876.118 kb on - strand at 1876.118 kb on - strand, within Ga0059261_1769 at 1876.138 kb on + strand, within Ga0059261_1769 at 1876.138 kb on + strand, within Ga0059261_1769 at 1876.138 kb on + strand, within Ga0059261_1769 at 1876.138 kb on + strand, within Ga0059261_1769 at 1876.138 kb on + strand, within Ga0059261_1769 at 1876.139 kb on - strand, within Ga0059261_1769 at 1877.687 kb on + strand at 1877.814 kb on + strand at 1877.815 kb on - strand at 1877.922 kb on - strand, within Ga0059261_1772 at 1877.922 kb on - strand, within Ga0059261_1772 at 1877.922 kb on - strand, within Ga0059261_1772
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay remove 1,876,063 + Ga0059261_1769 0.54 +1.7 1,876,117 + Ga0059261_1769 0.66 +1.3 1,876,117 + Ga0059261_1769 0.66 +0.9 1,876,118 - Ga0059261_1769 0.66 +0.0 1,876,118 - Ga0059261_1769 0.66 -0.8 1,876,118 - Ga0059261_1769 0.66 -1.7 1,876,118 - Ga0059261_1769 0.66 -0.4 1,876,118 - Ga0059261_1769 0.66 +1.8 1,876,118 - Ga0059261_1769 0.66 -0.2 1,876,118 - Ga0059261_1769 0.66 -1.9 1,876,118 - Ga0059261_1769 0.66 -1.9 1,876,118 - +5.5 1,876,118 - Ga0059261_1769 0.66 +2.4 1,876,138 + Ga0059261_1769 0.70 -0.4 1,876,138 + Ga0059261_1769 0.70 +0.2 1,876,138 + Ga0059261_1769 0.70 -1.5 1,876,138 + Ga0059261_1769 0.70 -1.4 1,876,138 + Ga0059261_1769 0.70 +0.8 1,876,139 - Ga0059261_1769 0.70 -1.1 1,877,687 + -1.1 1,877,814 + +1.5 1,877,815 - -1.0 1,877,922 - Ga0059261_1772 0.13 -0.8 1,877,922 - Ga0059261_1772 0.13 +1.3 1,877,922 - Ga0059261_1772 0.13 +1.1
Or see this region's nucleotide sequence