Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1443

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1441 and Ga0059261_1442 are separated by 60 nucleotidesGa0059261_1442 and Ga0059261_1443 are separated by 52 nucleotidesGa0059261_1443 and Ga0059261_1444 are separated by 130 nucleotidesGa0059261_1444 and Ga0059261_1445 are separated by 104 nucleotides Ga0059261_1441: Ga0059261_1441 - phosphoribosylamine--glycine ligase (EC 6.3.4.13), at 1,520,831 to 1,522,087 _1441 Ga0059261_1442: Ga0059261_1442 - hypothetical protein, at 1,522,148 to 1,522,360 _1442 Ga0059261_1443: Ga0059261_1443 - Hemolysins and related proteins containing CBS domains, at 1,522,413 to 1,523,720 _1443 Ga0059261_1444: Ga0059261_1444 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 1,523,851 to 1,524,519 _1444 Ga0059261_1445: Ga0059261_1445 - Cytosine/adenosine deaminases, at 1,524,624 to 1,525,073 _1445 Position (kb) 1522 1523 1524Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1522.106 kb on + strandat 1522.106 kb on + strandat 1522.107 kb on - strandat 1522.117 kb on + strandat 1522.118 kb on - strandat 1522.358 kb on + strandat 1522.358 kb on + strandat 1522.358 kb on + strandat 1522.358 kb on + strandat 1522.359 kb on - strandat 1522.359 kb on - strandat 1522.398 kb on + strandat 1522.398 kb on + strandat 1522.399 kb on - strandat 1522.414 kb on + strandat 1522.414 kb on + strandat 1522.414 kb on + strandat 1522.561 kb on + strand, within Ga0059261_1443at 1522.561 kb on + strand, within Ga0059261_1443at 1522.561 kb on + strand, within Ga0059261_1443at 1522.561 kb on + strand, within Ga0059261_1443at 1522.562 kb on - strand, within Ga0059261_1443at 1522.562 kb on - strand, within Ga0059261_1443at 1522.756 kb on + strand, within Ga0059261_1443at 1522.756 kb on + strand, within Ga0059261_1443at 1522.757 kb on - strand, within Ga0059261_1443at 1523.365 kb on + strand, within Ga0059261_1443at 1523.365 kb on + strand, within Ga0059261_1443at 1523.365 kb on + strand, within Ga0059261_1443at 1523.365 kb on + strand, within Ga0059261_1443at 1523.365 kb on + strand, within Ga0059261_1443at 1523.365 kb on + strand, within Ga0059261_1443at 1523.365 kb on + strand, within Ga0059261_1443at 1523.365 kb on + strand, within Ga0059261_1443at 1523.365 kb on + strand, within Ga0059261_1443at 1523.365 kb on + strand, within Ga0059261_1443at 1523.365 kb on + strand, within Ga0059261_1443at 1523.365 kb on + strand, within Ga0059261_1443at 1523.365 kb on + strand, within Ga0059261_1443at 1523.365 kb on + strand, within Ga0059261_1443at 1523.365 kb on + strand, within Ga0059261_1443at 1523.365 kb on + strand, within Ga0059261_1443at 1523.366 kb on - strand, within Ga0059261_1443at 1523.366 kb on - strand, within Ga0059261_1443at 1523.366 kb on - strand, within Ga0059261_1443at 1523.366 kb on - strand, within Ga0059261_1443at 1523.366 kb on - strand, within Ga0059261_1443at 1523.366 kb on - strand, within Ga0059261_1443at 1523.366 kb on - strand, within Ga0059261_1443at 1523.366 kb on - strand, within Ga0059261_1443at 1523.366 kb on - strand, within Ga0059261_1443at 1523.366 kb on - strand, within Ga0059261_1443at 1523.366 kb on - strand, within Ga0059261_1443at 1523.366 kb on - strand, within Ga0059261_1443at 1523.366 kb on - strand, within Ga0059261_1443at 1523.366 kb on - strand, within Ga0059261_1443at 1523.476 kb on + strandat 1523.476 kb on + strand, within Ga0059261_1443at 1523.736 kb on + strandat 1523.736 kb on + strandat 1523.736 kb on + strandat 1523.736 kb on + strandat 1523.736 kb on + strandat 1523.736 kb on + strandat 1523.737 kb on - strandat 1523.737 kb on - strandat 1523.737 kb on - strandat 1523.737 kb on - strandat 1523.737 kb on - strandat 1523.742 kb on + strandat 1523.742 kb on + strandat 1523.743 kb on - strandat 1523.743 kb on - strandat 1523.743 kb on - strandat 1523.828 kb on + strandat 1523.829 kb on - strandat 1523.856 kb on + strandat 1523.857 kb on - strandat 1523.857 kb on - strandat 1523.857 kb on - strandat 1523.857 kb on - strandat 1523.857 kb on - strandat 1523.857 kb on - strandat 1523.868 kb on + strandat 1523.869 kb on - strandat 1523.869 kb on - strandat 1523.869 kb on - strandat 1523.869 kb on - strandat 1523.983 kb on + strand, within Ga0059261_1444at 1523.983 kb on + strand, within Ga0059261_1444at 1523.983 kb on + strand, within Ga0059261_1444at 1523.983 kb on + strand, within Ga0059261_1444at 1523.984 kb on - strand, within Ga0059261_1444at 1524.079 kb on + strand, within Ga0059261_1444at 1524.079 kb on + strand, within Ga0059261_1444at 1524.079 kb on + strand, within Ga0059261_1444at 1524.079 kb on + strand, within Ga0059261_1444at 1524.079 kb on + strand, within Ga0059261_1444at 1524.079 kb on + strand, within Ga0059261_1444at 1524.079 kb on + strand, within Ga0059261_1444at 1524.079 kb on + strand, within Ga0059261_1444at 1524.079 kb on + strand, within Ga0059261_1444at 1524.079 kb on + strand, within Ga0059261_1444at 1524.079 kb on + strand, within Ga0059261_1444at 1524.079 kb on + strand, within Ga0059261_1444at 1524.079 kb on + strand, within Ga0059261_1444at 1524.080 kb on - strand, within Ga0059261_1444at 1524.080 kb on - strand, within Ga0059261_1444at 1524.080 kb on - strand, within Ga0059261_1444at 1524.080 kb on - strand, within Ga0059261_1444at 1524.080 kb on - strand, within Ga0059261_1444at 1524.080 kb on - strand, within Ga0059261_1444at 1524.081 kb on + strand, within Ga0059261_1444at 1524.081 kb on + strand, within Ga0059261_1444at 1524.081 kb on + strand, within Ga0059261_1444at 1524.081 kb on + strand, within Ga0059261_1444at 1524.081 kb on + strand, within Ga0059261_1444at 1524.082 kb on - strand, within Ga0059261_1444at 1524.082 kb on - strand, within Ga0059261_1444at 1524.082 kb on - strand, within Ga0059261_1444at 1524.082 kb on - strand, within Ga0059261_1444at 1524.082 kb on - strand, within Ga0059261_1444at 1524.082 kb on - strand, within Ga0059261_1444at 1524.082 kb on - strand, within Ga0059261_1444at 1524.263 kb on - strand, within Ga0059261_1444at 1524.263 kb on - strand, within Ga0059261_1444at 1524.274 kb on + strand, within Ga0059261_1444at 1524.274 kb on + strand, within Ga0059261_1444at 1524.274 kb on + strand, within Ga0059261_1444at 1524.274 kb on + strand, within Ga0059261_1444at 1524.274 kb on + strand, within Ga0059261_1444at 1524.275 kb on - strandat 1524.275 kb on - strand, within Ga0059261_1444at 1524.275 kb on - strand, within Ga0059261_1444at 1524.275 kb on - strand, within Ga0059261_1444at 1524.275 kb on - strand, within Ga0059261_1444at 1524.275 kb on - strand, within Ga0059261_1444at 1524.275 kb on - strand, within Ga0059261_1444at 1524.275 kb on - strand, within Ga0059261_1444at 1524.275 kb on - strand, within Ga0059261_1444at 1524.275 kb on - strand, within Ga0059261_1444at 1524.275 kb on - strand, within Ga0059261_1444at 1524.275 kb on - strand, within Ga0059261_1444at 1524.275 kb on - strand, within Ga0059261_1444at 1524.275 kb on - strand, within Ga0059261_1444at 1524.275 kb on - strand, within Ga0059261_1444at 1524.275 kb on - strand, within Ga0059261_1444at 1524.286 kb on + strand, within Ga0059261_1444at 1524.286 kb on + strand, within Ga0059261_1444at 1524.287 kb on - strand, within Ga0059261_1444at 1524.287 kb on - strand, within Ga0059261_1444at 1524.287 kb on - strand, within Ga0059261_1444at 1524.319 kb on + strand, within Ga0059261_1444at 1524.319 kb on + strand, within Ga0059261_1444at 1524.319 kb on + strand, within Ga0059261_1444at 1524.320 kb on - strand, within Ga0059261_1444at 1524.320 kb on - strand, within Ga0059261_1444at 1524.320 kb on - strand, within Ga0059261_1444at 1524.364 kb on + strand, within Ga0059261_1444at 1524.364 kb on + strand, within Ga0059261_1444at 1524.364 kb on + strand, within Ga0059261_1444at 1524.364 kb on + strand, within Ga0059261_1444at 1524.364 kb on + strand, within Ga0059261_1444at 1524.364 kb on + strand, within Ga0059261_1444at 1524.364 kb on + strand, within Ga0059261_1444at 1524.364 kb on + strand, within Ga0059261_1444at 1524.364 kb on + strand, within Ga0059261_1444at 1524.364 kb on + strand, within Ga0059261_1444at 1524.364 kb on + strand, within Ga0059261_1444at 1524.364 kb on + strand, within Ga0059261_1444at 1524.365 kb on - strand, within Ga0059261_1444at 1524.365 kb on - strand, within Ga0059261_1444at 1524.365 kb on - strand, within Ga0059261_1444at 1524.365 kb on - strand, within Ga0059261_1444at 1524.365 kb on - strand, within Ga0059261_1444at 1524.365 kb on - strand, within Ga0059261_1444at 1524.365 kb on - strand, within Ga0059261_1444at 1524.365 kb on - strand, within Ga0059261_1444at 1524.413 kb on - strand, within Ga0059261_1444at 1524.517 kb on + strandat 1524.517 kb on + strandat 1524.518 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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1,522,106 + +0.2
1,522,106 + -1.0
1,522,107 - +1.5
1,522,117 + -0.5
1,522,118 - -0.1
1,522,358 + -1.5
1,522,358 + -1.2
1,522,358 + +0.4
1,522,358 + +0.1
1,522,359 - -1.1
1,522,359 - +1.2
1,522,398 + -1.0
1,522,398 + +0.5
1,522,399 - +1.0
1,522,414 + +0.8
1,522,414 + -0.5
1,522,414 + +1.2
1,522,561 + Ga0059261_1443 0.11 +0.8
1,522,561 + Ga0059261_1443 0.11 +1.0
1,522,561 + Ga0059261_1443 0.11 -0.2
1,522,561 + Ga0059261_1443 0.11 +0.8
1,522,562 - Ga0059261_1443 0.11 +3.6
1,522,562 - Ga0059261_1443 0.11 -0.8
1,522,756 + Ga0059261_1443 0.26 +0.9
1,522,756 + Ga0059261_1443 0.26 +3.0
1,522,757 - Ga0059261_1443 0.26 -1.7
1,523,365 + Ga0059261_1443 0.73 -2.1
1,523,365 + Ga0059261_1443 0.73 -1.9
1,523,365 + Ga0059261_1443 0.73 -0.5
1,523,365 + Ga0059261_1443 0.73 +1.6
1,523,365 + Ga0059261_1443 0.73 +1.5
1,523,365 + Ga0059261_1443 0.73 +4.0
1,523,365 + Ga0059261_1443 0.73 +0.9
1,523,365 + Ga0059261_1443 0.73 -0.7
1,523,365 + Ga0059261_1443 0.73 -0.7
1,523,365 + Ga0059261_1443 0.73 +1.5
1,523,365 + Ga0059261_1443 0.73 -1.1
1,523,365 + Ga0059261_1443 0.73 -1.2
1,523,365 + Ga0059261_1443 0.73 +1.7
1,523,365 + Ga0059261_1443 0.73 -1.0
1,523,365 + Ga0059261_1443 0.73 +1.0
1,523,365 + Ga0059261_1443 0.73 +0.5
1,523,366 - Ga0059261_1443 0.73 +2.3
1,523,366 - Ga0059261_1443 0.73 -1.7
1,523,366 - Ga0059261_1443 0.73 -0.4
1,523,366 - Ga0059261_1443 0.73 -2.3
1,523,366 - Ga0059261_1443 0.73 -0.1
1,523,366 - Ga0059261_1443 0.73 +0.2
1,523,366 - Ga0059261_1443 0.73 +0.3
1,523,366 - Ga0059261_1443 0.73 -1.0
1,523,366 - Ga0059261_1443 0.73 -1.2
1,523,366 - Ga0059261_1443 0.73 -0.7
1,523,366 - Ga0059261_1443 0.73 -1.9
1,523,366 - Ga0059261_1443 0.73 -1.4
1,523,366 - Ga0059261_1443 0.73 -1.6
1,523,366 - Ga0059261_1443 0.73 +1.9
1,523,476 + +2.3
1,523,476 + Ga0059261_1443 0.81 +1.5
1,523,736 + +0.5
1,523,736 + +3.0
1,523,736 + -0.4
1,523,736 + -1.3
1,523,736 + -0.3
1,523,736 + +0.0
1,523,737 - +1.3
1,523,737 - +1.7
1,523,737 - +1.2
1,523,737 - +0.4
1,523,737 - -0.9
1,523,742 + -0.3
1,523,742 + +1.7
1,523,743 - -1.0
1,523,743 - +0.3
1,523,743 - -0.3
1,523,828 + +0.7
1,523,829 - -0.7
1,523,856 + +2.9
1,523,857 - -0.5
1,523,857 - +2.3
1,523,857 - -0.2
1,523,857 - +0.1
1,523,857 - -2.5
1,523,857 - +0.8
1,523,868 + +0.1
1,523,869 - +0.4
1,523,869 - +1.1
1,523,869 - +1.9
1,523,869 - +0.2
1,523,983 + Ga0059261_1444 0.20 -0.8
1,523,983 + Ga0059261_1444 0.20 -1.0
1,523,983 + Ga0059261_1444 0.20 -0.3
1,523,983 + Ga0059261_1444 0.20 +0.5
1,523,984 - Ga0059261_1444 0.20 +1.3
1,524,079 + Ga0059261_1444 0.34 +1.5
1,524,079 + Ga0059261_1444 0.34 +0.1
1,524,079 + Ga0059261_1444 0.34 -1.4
1,524,079 + Ga0059261_1444 0.34 -0.8
1,524,079 + Ga0059261_1444 0.34 -0.7
1,524,079 + Ga0059261_1444 0.34 -0.6
1,524,079 + Ga0059261_1444 0.34 +1.5
1,524,079 + Ga0059261_1444 0.34 +0.3
1,524,079 + Ga0059261_1444 0.34 -1.8
1,524,079 + Ga0059261_1444 0.34 +1.2
1,524,079 + Ga0059261_1444 0.34 +2.2
1,524,079 + Ga0059261_1444 0.34 -1.6
1,524,079 + Ga0059261_1444 0.34 +0.4
1,524,080 - Ga0059261_1444 0.34 -0.7
1,524,080 - Ga0059261_1444 0.34 -0.1
1,524,080 - Ga0059261_1444 0.34 +0.1
1,524,080 - Ga0059261_1444 0.34 +0.0
1,524,080 - Ga0059261_1444 0.34 -1.0
1,524,080 - Ga0059261_1444 0.34 -2.2
1,524,081 + Ga0059261_1444 0.34 +1.4
1,524,081 + Ga0059261_1444 0.34 +1.7
1,524,081 + Ga0059261_1444 0.34 +0.5
1,524,081 + Ga0059261_1444 0.34 -1.7
1,524,081 + Ga0059261_1444 0.34 +1.6
1,524,082 - Ga0059261_1444 0.35 -0.5
1,524,082 - Ga0059261_1444 0.35 +3.0
1,524,082 - Ga0059261_1444 0.35 +1.9
1,524,082 - Ga0059261_1444 0.35 +3.6
1,524,082 - Ga0059261_1444 0.35 +0.0
1,524,082 - Ga0059261_1444 0.35 -0.1
1,524,082 - Ga0059261_1444 0.35 +0.9
1,524,263 - Ga0059261_1444 0.62 +0.0
1,524,263 - Ga0059261_1444 0.62 -0.5
1,524,274 + Ga0059261_1444 0.63 -2.3
1,524,274 + Ga0059261_1444 0.63 -2.2
1,524,274 + Ga0059261_1444 0.63 +0.0
1,524,274 + Ga0059261_1444 0.63 +0.0
1,524,274 + Ga0059261_1444 0.63 -0.8
1,524,275 - +2.3
1,524,275 - Ga0059261_1444 0.63 -0.4
1,524,275 - Ga0059261_1444 0.63 +2.0
1,524,275 - Ga0059261_1444 0.63 -0.3
1,524,275 - Ga0059261_1444 0.63 +0.4
1,524,275 - Ga0059261_1444 0.63 +1.2
1,524,275 - Ga0059261_1444 0.63 +0.7
1,524,275 - Ga0059261_1444 0.63 -2.8
1,524,275 - Ga0059261_1444 0.63 +1.5
1,524,275 - Ga0059261_1444 0.63 -2.5
1,524,275 - Ga0059261_1444 0.63 -0.8
1,524,275 - Ga0059261_1444 0.63 +0.0
1,524,275 - Ga0059261_1444 0.63 -0.3
1,524,275 - Ga0059261_1444 0.63 +1.0
1,524,275 - Ga0059261_1444 0.63 +0.1
1,524,275 - Ga0059261_1444 0.63 +0.1
1,524,286 + Ga0059261_1444 0.65 -0.8
1,524,286 + Ga0059261_1444 0.65 -0.8
1,524,287 - Ga0059261_1444 0.65 -1.4
1,524,287 - Ga0059261_1444 0.65 +0.5
1,524,287 - Ga0059261_1444 0.65 +0.7
1,524,319 + Ga0059261_1444 0.70 +0.4
1,524,319 + Ga0059261_1444 0.70 -2.3
1,524,319 + Ga0059261_1444 0.70 +0.0
1,524,320 - Ga0059261_1444 0.70 -1.4
1,524,320 - Ga0059261_1444 0.70 -0.3
1,524,320 - Ga0059261_1444 0.70 -0.1
1,524,364 + Ga0059261_1444 0.77 +2.8
1,524,364 + Ga0059261_1444 0.77 +1.3
1,524,364 + Ga0059261_1444 0.77 -0.7
1,524,364 + Ga0059261_1444 0.77 +0.0
1,524,364 + Ga0059261_1444 0.77 +1.1
1,524,364 + Ga0059261_1444 0.77 +0.1
1,524,364 + Ga0059261_1444 0.77 +0.3
1,524,364 + Ga0059261_1444 0.77 -1.5
1,524,364 + Ga0059261_1444 0.77 +0.0
1,524,364 + Ga0059261_1444 0.77 -0.5
1,524,364 + Ga0059261_1444 0.77 +1.0
1,524,364 + Ga0059261_1444 0.77 -0.9
1,524,365 - Ga0059261_1444 0.77 -1.9
1,524,365 - Ga0059261_1444 0.77 -1.0
1,524,365 - Ga0059261_1444 0.77 -1.1
1,524,365 - Ga0059261_1444 0.77 +2.9
1,524,365 - Ga0059261_1444 0.77 +2.3
1,524,365 - Ga0059261_1444 0.77 +0.6
1,524,365 - Ga0059261_1444 0.77 +0.3
1,524,365 - Ga0059261_1444 0.77 +2.3
1,524,413 - Ga0059261_1444 0.84 +3.0
1,524,517 + -0.6
1,524,517 + -0.6
1,524,518 - -0.4

Or see this region's nucleotide sequence